Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_D14
(1230 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49886-4|CAA90053.1| 137|Caenorhabditis elegans Hypothetical pr... 130 3e-30
AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (... 31 1.3
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 2.2
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 29 6.7
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 29 6.7
U13019-16|AAK84569.1| 311|Caenorhabditis elegans Serpentine rec... 29 6.7
>Z49886-4|CAA90053.1| 137|Caenorhabditis elegans Hypothetical
protein C06A1.5 protein.
Length = 137
Score = 130 bits (313), Expect = 3e-30
Identities = 62/85 (72%), Positives = 70/85 (82%)
Frame = +3
Query: 264 GGGVDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKHGKI 443
G V S+ +TT +MTKYERARVLGTRALQIAM APVMVELEGETDPL+IA KELK +I
Sbjct: 52 GKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRI 111
Query: 444 PIIIRRYLPDHSYEDWSIDELIIID 518
PII+RRYLPD SYEDW D+L + D
Sbjct: 112 PIIVRRYLPDGSYEDWPTDQLQLAD 136
>AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (grd
related) protein19 protein.
Length = 157
Score = 31.5 bits (68), Expect = 1.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 1065 GGGGGGXXXXXXPPPPPXXXG 1127
GGGGGG PPPPP G
Sbjct: 34 GGGGGGGGCCAPPPPPPVCGG 54
Score = 31.5 bits (68), Expect = 1.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 1066 GGGGGGXXXXXXPPPPPXXXG 1128
GGGGGG PPPPP G
Sbjct: 34 GGGGGGGGCCAPPPPPPVCGG 54
Score = 30.7 bits (66), Expect = 2.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3
Query: 1114 GGGGGXXXXXXPPPPPP 1064
GGGGG PPPPPP
Sbjct: 34 GGGGGGGGCCAPPPPPP 50
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical protein
E02A10.2 protein.
Length = 385
Score = 30.7 bits (66), Expect = 2.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 1115 GGGGGXXXXXXPPPPPP 1065
GGGGG PPPPPP
Sbjct: 43 GGGGGCGGGCAPPPPPP 59
Score = 30.7 bits (66), Expect = 2.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 1115 GGGGGXXXXXXPPPPPP 1065
GGGGG PPPPPP
Sbjct: 100 GGGGGCGGGCAPPPPPP 116
Score = 29.1 bits (62), Expect = 6.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 1068 GGGGGXXXXXXPPPPPXXXG 1127
GGGGG PPPPP G
Sbjct: 43 GGGGGCGGGCAPPPPPPACG 62
Score = 29.1 bits (62), Expect = 6.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 1069 GGGGGXXXXXXPPPPPXXXG 1128
GGGGG PPPPP G
Sbjct: 43 GGGGGCGGGCAPPPPPPACG 62
Score = 29.1 bits (62), Expect = 6.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 1067 GGGGGXXXXXXXPPPPPXXG 1126
GGGGG PPPPP G
Sbjct: 100 GGGGGCGGGCAPPPPPPACG 119
Score = 29.1 bits (62), Expect = 6.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 1069 GGGGGXXXXXXPPPPPXXXG 1128
GGGGG PPPPP G
Sbjct: 100 GGGGGCGGGCAPPPPPPACG 119
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical protein
F53F1.5 protein.
Length = 215
Score = 29.1 bits (62), Expect = 6.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 1068 GGGGGXXXXXXPPPPPXXXG 1127
GGGGG PPPPP G
Sbjct: 22 GGGGGCGCAPPPPPPPCGCG 41
Score = 29.1 bits (62), Expect = 6.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 1069 GGGGGXXXXXXPPPPPXXXG 1128
GGGGG PPPPP G
Sbjct: 22 GGGGGCGCAPPPPPPPCGCG 41
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical protein
F53F1.4 protein.
Length = 105
Score = 29.1 bits (62), Expect = 6.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 1068 GGGGGXXXXXXPPPPPXXXG 1127
GGGGG PPPPP G
Sbjct: 22 GGGGGCGCAPPPPPPPCGCG 41
Score = 29.1 bits (62), Expect = 6.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 1069 GGGGGXXXXXXPPPPPXXXG 1128
GGGGG PPPPP G
Sbjct: 22 GGGGGCGCAPPPPPPPCGCG 41
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 protein.
Length = 231
Score = 29.1 bits (62), Expect = 6.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 1068 GGGGGXXXXXXPPPPPXXXG 1127
GGGGG PPPPP G
Sbjct: 22 GGGGGCGCAPPPPPPPCGCG 41
Score = 29.1 bits (62), Expect = 6.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 1069 GGGGGXXXXXXPPPPPXXXG 1128
GGGGG PPPPP G
Sbjct: 22 GGGGGCGCAPPPPPPPCGCG 41
>U13019-16|AAK84569.1| 311|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 6 protein.
Length = 311
Score = 29.1 bits (62), Expect = 6.7
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +1
Query: 127 WQMRSTKPMMVVQIMTTLQKKMITLKKQKNRKKMAIMCNVW 249
WQ+ + M V +++ + I K Q +K ++C +W
Sbjct: 196 WQLTYMQISMAVTLLSNIVTGAILWKSQNQSRKSRLLCRIW 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,977,868
Number of Sequences: 27780
Number of extensions: 327015
Number of successful extensions: 3827
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2383
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3401633308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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