Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D09
         (1234 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    29   1.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   5.3  

>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +2

Query: 605 EQVKELLKDVLHILYEYLKTFEVSDYIRAYEIFIACSSNTKKQFIMELTEFIGNHLSRQI 784
           E  K L   +    ++YL T +   Y   +++  + +SNTK   I  L +++ NH+ R+I
Sbjct: 410 EDPKMLSNSLFISQFDYLITEDPESYNDTFDVIESVNSNTK---IPILPKWLSNHIPREI 466


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 620  LLKDVLHILYEYLKTFEVSDYIRAYEIFIACSSNTKKQFIMELTE 754
            L+  VLH + ++ + F +SDYIR   +      + + + ++ L E
Sbjct: 1645 LMLVVLHKIVDHREAFPISDYIRRAYVLSELEKSIRMEKLLGLVE 1689


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,947,406
Number of Sequences: 5004
Number of extensions: 71157
Number of successful extensions: 147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)