Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D09
         (1234 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   5.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   5.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -3

Query: 344 VKPFQITKGT-VTIKSPTIKYNKILTIGLWTCI*LKQSGLLFYQDCLK*LLLLRYFCTLS 168
           V+P  I+  + V I +  I    +LT+ +W  I  +  G  F+    K ++L      +S
Sbjct: 617 VRPRYISPASQVCIAAALIALQIVLTL-VWMII--EPPGTRFFYPDRKQVILKCNIQDMS 673

Query: 167 NLNETQAYNILIQIIMRIYAYK 102
            L  +Q YN L+ +I  +YA K
Sbjct: 674 FLF-SQLYNALLILISTVYAVK 694


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -3

Query: 344 VKPFQITKGT-VTIKSPTIKYNKILTIGLWTCI*LKQSGLLFYQDCLK*LLLLRYFCTLS 168
           V+P  I+  + V I +  I    +LT+ +W  I  +  G  F+    K ++L      +S
Sbjct: 707 VRPRYISPASQVCIAAALIALQIVLTL-VWMII--EPPGTRFFYPDRKQVILKCNIQDMS 763

Query: 167 NLNETQAYNILIQIIMRIYAYK 102
            L  +Q YN L+ +I  +YA K
Sbjct: 764 FLF-SQLYNALLILISTVYAVK 784


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,227
Number of Sequences: 438
Number of extensions: 5238
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42022050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)