Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D08
         (1206 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   1.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   6.0  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   6.0  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   8.0  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 686 DGLISIICQSVSADTLTCTIENGGML 763
           DG I  +C S+  DTL C    G +L
Sbjct: 218 DGSIVFVCFSLVEDTLPCVFFLGSIL 243


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 570 VSPFFSSTSAEPPPSKSP 517
           +SP   +  A PPP++SP
Sbjct: 106 LSPQIQTQVARPPPARSP 123


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 570 VSPFFSSTSAEPPPSKSP 517
           +SP   +  A PPP++SP
Sbjct: 106 LSPQIQTQVARPPPARSP 123


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 819 PRRTSRTCSSASN 857
           P+RT+ T SSASN
Sbjct: 203 PQRTASTASSASN 215


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,600
Number of Sequences: 336
Number of extensions: 4116
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 35144262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)