Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D08
         (1206 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...   226   4e-60
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    28   2.3  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    28   3.0  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.9  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    27   5.2  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   5.2  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   6.9  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    27   6.9  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    26   9.1  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score =  226 bits (553), Expect = 4e-60
 Identities = 115/225 (51%), Positives = 144/225 (64%), Gaps = 1/225 (0%)
 Frame = +2

Query: 281 RLSGXICTXGPASRNVAVLXXXMEXGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKL 460
           R +  ICT GP S NV  L    + GMN+ RMNFSHGS+EYH   I N R+A  +     
Sbjct: 26  RRTSIICTIGPKSNNVETLCKLRDAGMNIVRMNFSHGSYEYHQSVIDNARKASATNPL-- 83

Query: 461 GSPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLTTSSDYQEKGNADTIYVDYK 640
              F LAIALDTKGPEIRTGL  GG   +  +  G  +  TT   Y EK N   +Y+DYK
Sbjct: 84  ---FPLAIALDTKGPEIRTGLTVGG--TDYPISSGHEMIFTTDDAYAEKCNDKVMYIDYK 138

Query: 641 NITNVVKPGNRIFIDDGLISI-ICQSVSADTLTCTIENGGMLGSRKGVNLPGIPVDLPAV 817
           NIT V++PG  I++DDG++S  + + V    L   + N G + S+KGVNLP   VDLPA+
Sbjct: 139 NITKVIQPGRIIYVDDGILSFTVIEKVDDKNLKVRVNNNGKISSKKGVNLPKTDVDLPAL 198

Query: 818 SEKDKSDLLFGVEQGVDMIFASFIRNGAXLHEIRGILGEKGKNIR 952
           SEKDK+DL FGV+ GVDMIFASFIR    +  IR +LGE+GKNI+
Sbjct: 199 SEKDKADLRFGVKNGVDMIFASFIRRAEDVIHIREVLGEEGKNIK 243



 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
 Frame = +1

Query: 934  KGEEHQIISKXENHQGMVN*NXIIXESDGIMVARGXLGIXIPXKR-YPXPKNMIAKC 1101
            +G+  +II K EN QG+ N + I+  +DGIMVARG LGI IP  + +   K MIAKC
Sbjct: 238  EGKNIKIICKIENQQGVNNFDSILDVTDGIMVARGDLGIEIPASQVFVAQKMMIAKC 294


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 798 PWTYPQSPRRTSRTCSSASNKAL 866
           P T P SPRR+ +  S A NKAL
Sbjct: 7   PSTAPSSPRRSIQRISDAKNKAL 29


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 830 KSDLLFGVEQGVDMIFASFIRNGAXLHEIRGILGEKGKNIRSSPRXKI 973
           K +LLFGV+ G D+IF   +       EIR  L       + + R KI
Sbjct: 341 KYELLFGVQSGGDLIFVPTVSLTIIQSEIRNRLYSVKSPTQMAAREKI 388


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 745 NGTRKSVSADRLTDDRDEAIIDEDSVSWLHDIR 647
           N TRKS+S  + TD      + +D  SWL  +R
Sbjct: 576 NKTRKSISHSKNTDKHVGNELPQDIPSWLRSLR 608


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 27/94 (28%), Positives = 40/94 (42%)
 Frame = -3

Query: 766 SEHTSVFNGTRKSVSADRLTDDRDEAIIDEDSVSWLHDIRYVLVVHVNCISIAFLLIIRT 587
           S+ T   +G  K V A  +T + D ++    S+S   D+        + +S  F  ++R 
Sbjct: 474 SDQTFENDGASKVVPAGNITLNSDNSL--HHSISESEDLS-----SASTLSDYFRFVLRV 526

Query: 586 CRQLYSLSLLQFDFS*AAAFQEPSSDLRSFSVQC 485
            + LY    L FD S   A  E    LRS  V C
Sbjct: 527 GKSLYYAGELSFDISKLKAETEHQQLLRSL-VSC 559


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 26/90 (28%), Positives = 36/90 (40%)
 Frame = +2

Query: 503 PEIRTGLLEGGGSAEVELKKGETIKLTTSSDYQEKGNADTIYVDYKNITNVVKPGNRIFI 682
           P  RT          V    G   K +TS   + K NA T  V   +    V+PG+RIF 
Sbjct: 239 PPTRTSTTRPLSRVNVTNASGSISKNSTSPS-KVKVNASTKIVRPVSAAQTVRPGSRIFR 297

Query: 683 DDGLISIICQSVSADTLTCTIENGGMLGSR 772
           ++   +    +VSA T   T+     L  R
Sbjct: 298 ENSASNTQRPNVSA-TSNSTVRVASSLAVR 326


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 567 SPFFSSTSAEPPPSKSPVLISGPLVSNAMAKEKGEPSL 454
           SP   ST+A  P  K+P   +  L+S   +KEK  PS+
Sbjct: 305 SPLHQSTTANHP-EKTPSRAAASLLSILDSKEKNTPSI 341


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 619 YNLRGLQEHNECREARKPNLHR*W 690
           ++LRG   H  C EA+ PN+   W
Sbjct: 89  HDLRGSHLHTVCEEAKCPNIGECW 112


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 748 KRRYARIPERRQPARHTRGPTRSLREGQV 834
           + RY  IPE R+ ARH   PT   +  ++
Sbjct: 369 RERYKHIPEIRRIARHRHLPTNVKKAAEI 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,855,019
Number of Sequences: 5004
Number of extensions: 69475
Number of successful extensions: 230
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 651443514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)