Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D07
         (1281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    35   0.028
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.79 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    29   1.4  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.7 bits (76), Expect = 0.028
 Identities = 35/141 (24%), Positives = 38/141 (26%), Gaps = 1/141 (0%)
 Frame = +1

Query: 430 PVPPPXXPXPXXFXXGEXXXPPPRGXXGXPXXXGX-TPXKXXXPKXXXRAXTXKRAXWXX 606
           P PPP  P P           PPR            +  K   P    R      A    
Sbjct: 251 PAPPPIPP-PSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKK 309

Query: 607 FXXGPPPPXXLXKXXPPFXGGXXPXGFXXSRGFPXENPPXXPPXPTXAVXXXPXXFXPLG 786
               PPPP    +  PP   G                PP  PP  + A    P    P G
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSL----------PPPPPPPRSNAAGSIP--LPPQG 357

Query: 787 XXGPXXXPPRXXXXXGXGXPP 849
              P   PPR     G   PP
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPP 378



 Score = 30.7 bits (66), Expect = 0.45
 Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
 Frame = +3

Query: 612 PXAPPPXXXSKNXXPISXGXXPXGXXKXPGFPPXK-PPXXPPXSHPXRXXXXXPLXPXGX 788
           P APPP    ++   +     P G       PP   PP  PP + P       P  P G 
Sbjct: 388 PPAPPPAIPGRSAPALP----PLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGA 443

Query: 789 XGXXXXPP 812
                 PP
Sbjct: 444 PAAPPLPP 451


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 22/67 (32%), Positives = 22/67 (32%)
 Frame = -3

Query: 811 GGXXKXPXXPXGXXGXXFXXRXGWXXGGXXGGFXGGNPGXFXXPXGXXPXEMGXXFXEXX 632
           GG    P  P G  G       G   GG  GGF GG  G    P G      G       
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGH-GGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253

Query: 631 XGGGAXG 611
            GGG  G
Sbjct: 254 FGGGPGG 260



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = -3

Query: 733 GGXXGGFXGGNPGXFXXPXGXXPXEMGXXFXEXXXGGGAXGXXP 602
           GG  GGF GG PG F    G  P   G        G G  G  P
Sbjct: 227 GGGPGGFEGG-PGGF----GGGPGGFGGGLGGFGGGPGGFGGGP 265


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 621 PPPXXXSKNXXPISXGXXPXGXXKXPGFPPXKPPXXPPXSHP 746
           PPP    +N  P +    P    +   +PP + P  P  ++P
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQAYP 247


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -3

Query: 532 PPXXGXTRXPPLGGGXXXPPXXXPGAXGXXGGERXG 425
           PP  G    P +GGG   P     G  G  GG R G
Sbjct: 100 PPPRGPLFGPRIGGGHHGPLHGPHGGFGGRGGGRMG 135


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 437 PPPXXPGPXXSGXGXGXPPP 496
           PPP  P P  +G G   PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,501
Number of Sequences: 5004
Number of extensions: 34699
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)