Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D04
         (1196 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     131   1e-32
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.         113   2e-27
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      38   1e-04
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   1.00 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   1.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   1.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   3.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   7.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  131 bits (317), Expect = 1e-32
 Identities = 58/116 (50%), Positives = 82/116 (70%)
 Frame = +3

Query: 192 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEM 371
           M   + F L WNN+ +++++ F  L    D VDVTLA +GR L+AH++VLS CSPYF+E+
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFREL 60

Query: 372 FKMNPTQHPIVFLRDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLT 539
            K  P +HP++ L+DV+ S L  L++F+Y GEVNV Q  L+SF+ TAE L+V GLT
Sbjct: 61  LKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLT 116


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score =  113 bits (273), Expect = 2e-27
 Identities = 52/112 (46%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
 Frame = +3

Query: 204 EQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFKMN 383
           + + L WNN+ +NM++ FH LL     VDVTLA     L+AHK+VLS CS YFQ++   N
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSN 68

Query: 384 PTQHP-IVFLRDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 536
           P +HP I+  +DV  + L+ +++F+Y+GE++V Q EL S + TA+QL++KGL
Sbjct: 69  PCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGL 120


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 38.3 bits (85), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 192 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAE 308
           M   + F L WNN+ +++++ F  L    D VDVTLA E
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 441 LLQFMYQGEVNVKQEELASFIS-TAEQLQVKGLTGNQNEE 557
           ++  +Y G VNV+ E + S++    ++  V    GN NE+
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEK 82


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 995 NINISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLI 873
           N  +S  R  +++  H   ++  +SF IV   +I+I  TL+
Sbjct: 388 NSEVSKSRTKESAWRHFAAIIEWLSFFIVIFTYIIILITLV 428


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 8   RPYREFLKISRSRTSFKRG-GRTSE 79
           R YRE+ + SR R+  +RG GR+ E
Sbjct: 302 REYREYRETSRERSRDRRGRGRSRE 326


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 559 LSSF*LPVKPLT*SCSAVLINDANSSCLTLTSP 461
           LSS      P+T + S ++ N  NS+C    SP
Sbjct: 323 LSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSP 355


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 168 VPRRVVAIMASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTL 299
           V R +VA++ +   F +CW  FHA      +   S+    DV +
Sbjct: 283 VIRMLVAVVVA---FFICWAPFHAQRLLAVYAQNSKDKPEDVLI 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,417
Number of Sequences: 438
Number of extensions: 5556
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40849839
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)