Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D03
         (1199 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   7.9  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    22   7.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 503 PDRKTA-PHTNICPRATSPTSLFEEPLAC 420
           P+ + A P     P  +SP S+ E+PL C
Sbjct: 48  PEEEAASPTPGDVPTPSSPRSISEDPLNC 76


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 103 LKMKDESEXNKPQTQAKVTSFVLESFDLLKAAKDDARLTGGTKIIT 240
           +K +DES+  KP T  K+     +S D      +  R  GGTK  T
Sbjct: 80  VKKEDESDEEKPTTSFKLKDSSSDSED------ERPRPGGGTKYQT 119


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 166 VLESFDLLKAAKDDARLTGGTKIITQLQ 249
           VLE  D+ K   D+  L GG+  I ++Q
Sbjct: 147 VLEDADMTKDQIDEIVLVGGSTRIPKIQ 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,090
Number of Sequences: 336
Number of extensions: 4759
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 34938740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)