Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_D03
(1199 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 41 3e-04
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 28 2.2
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 6.8
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 6.8
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 6.8
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 6.8
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 27 6.8
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 26 9.0
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 26 9.0
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 26 9.0
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 41.1 bits (92), Expect = 3e-04
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 3/137 (2%)
Frame = +1
Query: 157 TSFVLESFDLLKAAKDDARLTGGTKIITQLQDNENEKDVQYVLKRLVRSLGANVPDMRTG 336
T LE F L + RL+ ++I L NE++++Y L RL + L + R G
Sbjct: 3 TKTQLELFTKLTSNDKAIRLSSAAQLIDSLS---NEEELKYSLNRLTKGLSSGRESARIG 59
Query: 337 YFATLVALLTKFDQIXXXXXXXXXXXXXHANGSSK-SEVGDVALGQILVCGAVFRSGLI- 510
+ L LLT+ I A+G+ K + D G + ++ SG++
Sbjct: 60 FAVALTELLTRTKDIRATHVLDLLVKHNTASGNLKGQDERDFYFGLLFGLQSIVYSGILT 119
Query: 511 -MKCTTEEQTEIIKLLM 558
+ T E+ ++ LL+
Sbjct: 120 HKESTIEDFQRVVDLLL 136
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 28.3 bits (60), Expect = 2.2
Identities = 23/78 (29%), Positives = 39/78 (50%)
Frame = +3
Query: 540 NY*ALNECKQKKTYLSTVAYLIFLDFINGLDVENFTSIVWSNIKQDFKKELSEHTLDSLY 719
NY +N +K ++T L +DF+ G V +T ++FKK E L+S+
Sbjct: 115 NYNLVNANNKKAYQVATSPQL--MDFMKGFYV-TYTK----ETAREFKKAFKERNLESMD 167
Query: 720 FLMVANKKFPDVVKLRKL 773
+LM N +F D + L ++
Sbjct: 168 YLMRHN-EFNDAIDLNEV 184
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 641 FHFNCLVKHKTRFQERIIRTYSRLSILSY 727
F F C+V + +F R IRT+S SI ++
Sbjct: 72 FTFGCVVVYHNKFFPRFIRTHSINSIRTF 100
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 641 FHFNCLVKHKTRFQERIIRTYSRLSILSY 727
F F C+V + +F R IRT+S SI ++
Sbjct: 72 FTFGCVVVYHNKFFPRFIRTHSINSIRTF 100
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 641 FHFNCLVKHKTRFQERIIRTYSRLSILSY 727
F F C+V + +F R IRT+S SI ++
Sbjct: 72 FTFGCVVVYHNKFFPRFIRTHSINSIRTF 100
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 641 FHFNCLVKHKTRFQERIIRTYSRLSILSY 727
F F C+V + +F R IRT+S SI ++
Sbjct: 72 FTFGCVVVYHNKFFPRFIRTHSINSIRTF 100
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 6.8
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = -2
Query: 850 EKSTPVISFSHTGWILSSHSISEVPINFRSFTTSGNFLFATI----RKYRESRVCSDNSF 683
+ +P++ S+ +H S+ + R ++SG LFA + +KY RV S+
Sbjct: 2 DSDSPILPLSNNPPAARTHDHSQRNNHARHVSSSGTTLFAPVKPATKKYNYRRVSPHGSY 61
Query: 682 LKSCFMFDQTIEVKFSTSNP 623
+ + +S NP
Sbjct: 62 ISPLEAMTVKLADTYSICNP 81
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +3
Query: 582 LSTVAYLIFLDFINGLDVENFTSIVWSNIKQDFK-KELSEHTLD 710
LS+ A L ++D G+DV+ F+ +W +I D K ++ ++ +LD
Sbjct: 331 LSSFAKL-YIDRHGGIDVDLFSKRLWGDIYFDSKTRKFAKQSLD 373
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 637 KISLQLFGQT*NKISRKNYPNILSTLYTFLW 729
+ LQ Q +IS+K P+I YT+LW
Sbjct: 535 QFKLQSGDQNTFRISKKKKPSICPIAYTYLW 565
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 900 SPHLXLFWLSGIDSQLTKHNRNRELVAVNI 989
S + L+ L+ I LTKH RNR LV++ +
Sbjct: 257 SQNANLYNLNSIRRNLTKHFRNRVLVSLYV 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,091,630
Number of Sequences: 5004
Number of extensions: 79925
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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