Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D03
         (1199 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188...    32   0.78 

>02_01_0282 +
           1882844-1883413,1883519-1883644,1883733-1883930,
           1884442-1884666,1884844-1885224,1885282-1885989,
           1886546-1886839,1887211-1887709,1887949-1888721
          Length = 1257

 Score = 32.3 bits (70), Expect = 0.78
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
 Frame = +1

Query: 271 VQYVLKRLVRSLGANVPDMRTGYFATLVALLTKFDQIXXXXXXXXXXXXXHANGSSKS-E 447
           V+Y ++RL+R + ++    R G+   L  +L     I               + S +  E
Sbjct: 174 VRYAIRRLIRGISSSREFARQGFALGLAVVLESIHAISVEAIMKLIPNLLEYSASMRGPE 233

Query: 448 VGDVALGQILVCGAVFRSGLIM-KCTTEEQTEIIK 549
             D  LG++   G++ RSG +  +   EE + I+K
Sbjct: 234 AKDNLLGRLFGYGSIVRSGRVSGQWAHEEGSPIVK 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,510,045
Number of Sequences: 37544
Number of extensions: 438182
Number of successful extensions: 910
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3666490380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)