Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D03
         (1199 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          26   0.76 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      26   0.76 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   9.3  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = -2

Query: 835 VISFSHTGWILSSHSISEVPINF 767
           +++ ++TGW L+ H++ E  +N+
Sbjct: 199 LLAANYTGWYLTKHNVPEQRLNY 221


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = -2

Query: 835 VISFSHTGWILSSHSISEVPINF 767
           +++ ++TGW L+ H++ E  +N+
Sbjct: 199 LLAANYTGWYLTKHNVPEQRLNY 221


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 687 ELSEHTLDSLYFLMVANKKFPDVVKLRKLIGTSEILCE-----DNIQPV 818
           E +    D  +  MV ++ F  +  +  ++GT  ILCE     DN +P+
Sbjct: 470 EFNAEDQDWGFVAMVLDRLFLWIFTIASIVGTFIILCEAPALRDNTKPI 518


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 599 ISNSA*ICFFLLALIKSLIISVCSS 525
           +S+ A +C F L  I S  + +C S
Sbjct: 427 VSDRALLCVFFLTTIVSTTVILCGS 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,877
Number of Sequences: 438
Number of extensions: 5015
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40970340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)