Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D02
         (1203 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L35013-1|AAA60300.1|  424|Homo sapiens spliceosomal protein prot...    32   3.6  
BC090883-1|AAH90883.1|  424|Homo sapiens splicing factor 3b, sub...    32   3.6  
BC023532-1|AAH23532.1|  641|Homo sapiens WW domain binding prote...    32   3.6  
BC016441-1|AAH16441.2|  400|Homo sapiens WBP11 protein protein.        32   3.6  
BC013886-1|AAH13886.1|  424|Homo sapiens splicing factor 3b, sub...    32   3.6  
BC004273-1|AAH04273.1|  424|Homo sapiens splicing factor 3b, sub...    32   3.6  
BC001621-1|AAH01621.1|  641|Homo sapiens WW domain binding prote...    32   3.6  
AL591493-2|CAI12554.1|  424|Homo sapiens splicing factor 3b, sub...    32   3.6  
AL590487-2|CAI12648.1|  424|Homo sapiens splicing factor 3b, sub...    32   3.6  
AK223322-1|BAD97042.1|  424|Homo sapiens splicing factor 3b, sub...    32   3.6  
AF118023-1|AAD30425.1|  641|Homo sapiens SH3 domain-binding prot...    32   3.6  
AB029309-1|BAA88410.1|  641|Homo sapiens Npw38-binding protein N...    32   3.6  

>L35013-1|AAA60300.1|  424|Homo sapiens spliceosomal protein protein.
          Length = 424

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = +3

Query: 1062 GGGXPXXGLXXX----PXXXPPGXXPPGXPPXXPXP 1157
            G G P  G+       P   PPG  PPG PP  P P
Sbjct: 229  GSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPP 264


>BC090883-1|AAH90883.1|  424|Homo sapiens splicing factor 3b, subunit
            4, 49kDa protein.
          Length = 424

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = +3

Query: 1062 GGGXPXXGLXXX----PXXXPPGXXPPGXPPXXPXP 1157
            G G P  G+       P   PPG  PPG PP  P P
Sbjct: 229  GSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPP 264


>BC023532-1|AAH23532.1|  641|Homo sapiens WW domain binding protein 11
            protein.
          Length = 641

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
 Frame = +3

Query: 957  GXXPXKXAGXXGVXPXGXXP--PXXXXXXKXXXPXXXGGGXPXXGLXXXPXXXPPGXXPP 1130
            G  P +  G     P G  P  P      +   P   G   P  G+   P   P G  PP
Sbjct: 461  GPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPP 520

Query: 1131 GXPPXXPXP 1157
            G  P  P P
Sbjct: 521  GLFPPAPLP 529


>BC016441-1|AAH16441.2|  400|Homo sapiens WBP11 protein protein.
          Length = 400

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
 Frame = +3

Query: 957  GXXPXKXAGXXGVXPXGXXP--PXXXXXXKXXXPXXXGGGXPXXGLXXXPXXXPPGXXPP 1130
            G  P +  G     P G  P  P      +   P   G   P  G+   P   P G  PP
Sbjct: 220  GPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPP 279

Query: 1131 GXPPXXPXP 1157
            G  P  P P
Sbjct: 280  GLFPPAPLP 288


>BC013886-1|AAH13886.1|  424|Homo sapiens splicing factor 3b, subunit
            4, 49kDa protein.
          Length = 424

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = +3

Query: 1062 GGGXPXXGLXXX----PXXXPPGXXPPGXPPXXPXP 1157
            G G P  G+       P   PPG  PPG PP  P P
Sbjct: 229  GSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPP 264


>BC004273-1|AAH04273.1|  424|Homo sapiens splicing factor 3b, subunit
            4, 49kDa protein.
          Length = 424

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = +3

Query: 1062 GGGXPXXGLXXX----PXXXPPGXXPPGXPPXXPXP 1157
            G G P  G+       P   PPG  PPG PP  P P
Sbjct: 229  GSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPP 264


>BC001621-1|AAH01621.1|  641|Homo sapiens WW domain binding protein 11
            protein.
          Length = 641

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
 Frame = +3

Query: 957  GXXPXKXAGXXGVXPXGXXP--PXXXXXXKXXXPXXXGGGXPXXGLXXXPXXXPPGXXPP 1130
            G  P +  G     P G  P  P      +   P   G   P  G+   P   P G  PP
Sbjct: 461  GPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPP 520

Query: 1131 GXPPXXPXP 1157
            G  P  P P
Sbjct: 521  GLFPPAPLP 529


>AL591493-2|CAI12554.1|  424|Homo sapiens splicing factor 3b, subunit
            4, 49kDa protein.
          Length = 424

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = +3

Query: 1062 GGGXPXXGLXXX----PXXXPPGXXPPGXPPXXPXP 1157
            G G P  G+       P   PPG  PPG PP  P P
Sbjct: 229  GSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPP 264


>AL590487-2|CAI12648.1|  424|Homo sapiens splicing factor 3b, subunit
            4, 49kDa protein.
          Length = 424

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = +3

Query: 1062 GGGXPXXGLXXX----PXXXPPGXXPPGXPPXXPXP 1157
            G G P  G+       P   PPG  PPG PP  P P
Sbjct: 229  GSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPP 264


>AK223322-1|BAD97042.1|  424|Homo sapiens splicing factor 3b, subunit
            4 variant protein.
          Length = 424

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = +3

Query: 1062 GGGXPXXGLXXX----PXXXPPGXXPPGXPPXXPXP 1157
            G G P  G+       P   PPG  PPG PP  P P
Sbjct: 229  GSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPP 264


>AF118023-1|AAD30425.1|  641|Homo sapiens SH3 domain-binding protein
            SNP70 protein.
          Length = 641

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
 Frame = +3

Query: 957  GXXPXKXAGXXGVXPXGXXP--PXXXXXXKXXXPXXXGGGXPXXGLXXXPXXXPPGXXPP 1130
            G  P +  G     P G  P  P      +   P   G   P  G+   P   P G  PP
Sbjct: 461  GPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPP 520

Query: 1131 GXPPXXPXP 1157
            G  P  P P
Sbjct: 521  GLFPPAPLP 529


>AB029309-1|BAA88410.1|  641|Homo sapiens Npw38-binding protein NpwBP
            protein.
          Length = 641

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
 Frame = +3

Query: 957  GXXPXKXAGXXGVXPXGXXP--PXXXXXXKXXXPXXXGGGXPXXGLXXXPXXXPPGXXPP 1130
            G  P +  G     P G  P  P      +   P   G   P  G+   P   P G  PP
Sbjct: 461  GPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPP 520

Query: 1131 GXPPXXPXP 1157
            G  P  P P
Sbjct: 521  GLFPPAPLP 529


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,766,580
Number of Sequences: 237096
Number of extensions: 2118406
Number of successful extensions: 6232
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5681
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16954238840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)