Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D01
         (1218 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +1

Query: 781 APXXPXXXXGXPQNPXGXXPXXGXXXPPXGGXXXKPP 891
           AP         PQ P    P      PP GG    PP
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 714 GXPPXKPPXXPPXPXP 761
           G PP  PP  PP   P
Sbjct: 45  GPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +1

Query: 388 PXKKTPXPRGXGGXXXGPPPXPPPXKP 468
           P + +P     G    GPP  PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.148    0.491 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,979
Number of Sequences: 438
Number of extensions: 7277
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41693346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)