Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_C23
(1169 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 332 5e-92
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 245 8e-66
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 136 7e-33
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 102 8e-23
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 49 1e-06
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 48 3e-06
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 44 5e-05
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 40 5e-04
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 40 7e-04
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 39 0.001
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 39 0.002
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 38 0.002
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 38 0.004
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 36 0.008
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 35 0.019
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 35 0.025
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 32 0.18
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 32 0.18
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 31 0.31
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 31 0.41
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 31 0.41
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M... 29 1.6
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 332 bits (816), Expect = 5e-92
Identities = 155/179 (86%), Positives = 165/179 (92%)
Frame = +1
Query: 184 MGHLFAHLFKGLFGKKXMSXLMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 363
MG + LF+ LFGK+ M LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 364 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAV 543
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRERI EA EEL RML+EDELRDA+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDAL 120
Query: 544 LLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 720
LL+FANKQDLPNAMNAAEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLS LKN
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 245 bits (600), Expect = 8e-66
Identities = 115/174 (66%), Positives = 134/174 (77%)
Frame = +1
Query: 196 FAHLFKGLFGKKXMSXLMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 375
F+ F LF K M LM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFN 68
Query: 376 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIF 555
VWDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EAR+EL R++S+ E+RD +LL+
Sbjct: 69 VWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVL 128
Query: 556 ANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 717
ANKQDLP A++ A+ITD L L L++R W +Q TCA +GDGL EGL WLS K
Sbjct: 129 ANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 136 bits (328), Expect = 7e-33
Identities = 64/165 (38%), Positives = 105/165 (63%), Gaps = 1/165 (0%)
Frame = +1
Query: 226 KKXMSXLMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDK 402
++ + L++GLD AGKTTIL K L E V + PT GF + T+E + + FT+WD+GGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 403 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNA 582
+R W++YF++T+ +I+VVDS D R+ E R L +L E++L +L+ ANK D+ A
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGA 132
Query: 583 MNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 717
+++ EI+ L + ++ +W I + A +G + + + WL+N LK
Sbjct: 133 LSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 102 bits (245), Expect = 8e-23
Identities = 51/131 (38%), Positives = 75/131 (57%)
Frame = +1
Query: 229 KXMSXLMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 408
K L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 409 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMN 588
LWR YF G++++VD D ER+ E++ EL +L+ +EL LI NK D P A++
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAIS 138
Query: 589 AAEITDKLGLH 621
E+ LGL+
Sbjct: 139 EDELKAALGLY 149
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 49.2 bits (112), Expect = 1e-06
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Frame = +1
Query: 244 LMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKIR 408
L++G GK+ +L + + I TIG F + T E K + +WD GQ++ R
Sbjct: 12 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFR 71
Query: 409 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 573
+ Y++ G+I V D D++ ++ L + + L+ NK D+
Sbjct: 72 TITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVGNKSDM 125
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 47.6 bits (108), Expect = 3e-06
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +1
Query: 244 LMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKIR 408
L++G GK+ +L + + I TIG F + T+E K I +WD GQ++ R
Sbjct: 13 LLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 72
Query: 409 PLWRHYFQNTQGLIFVVDSNDRERIGEAR 495
+ Y++ G++ + D D++ R
Sbjct: 73 TITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 43.6 bits (98), Expect = 5e-05
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Frame = +1
Query: 244 LMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDKIR 408
+++G GK+ +L + E + + TIG T ++ K I +WD GQ++ R
Sbjct: 14 VLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYR 73
Query: 409 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 573
+ Y++ G + V D + L + L E + V+++ NK DL
Sbjct: 74 AITSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSNIVIMLVGNKTDL 127
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 40.3 bits (90), Expect = 5e-04
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +1
Query: 352 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDEL 531
+ K I +WD GQ+K R + R+Y++ G + V D +++ E L + +
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPS 117
Query: 532 RDAVLLIFANKQDLPN 579
V+L +K DL N
Sbjct: 118 TICVVLA-GSKSDLQN 132
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 39.9 bits (89), Expect = 7e-04
Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Frame = +1
Query: 220 FGKKXMSXLMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWD 384
F + + +G + GKT+++ + + T TIG + + +E + + +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 385 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANK 564
GQ++ R L Y +++ I V D + E+ + + + D ++++ NK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDDVIIVLVGNK 125
Query: 565 QDL 573
DL
Sbjct: 126 TDL 128
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 39.1 bits (87), Expect = 0.001
Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Frame = +1
Query: 319 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF----------VVDSN 468
I T G + ET + +DVGGQ R W H F+N L+F +V+ N
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDN 278
Query: 469 DRERIGEAREELMRMLSEDELRDAVLLIFANKQDL-PNAMNAAEITDKL-GLHSLRNRNW 642
++ EA + + ++ +++F NK DL ++ + I + +
Sbjct: 279 SGNQMQEALLLWDSICNSSWFSESAMILFLNKLDLFKRKVHISPIQKHFPDYQEVGSTPT 338
Query: 643 YIQATCATSGDGLYEGLDWLSNQLKNANR 729
++Q C + + + G+ + + ++ NR
Sbjct: 339 FVQTQCPLADNAVRSGMYYFYLKFESLNR 367
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +1
Query: 325 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER--IGEARE 498
T+G + + ++ ++DVGGQ R W + F+N +IF V ND ++ A
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 499 ELMRMLSEDELRDAVL 546
E R++ L D+++
Sbjct: 239 ERNRLVESISLFDSII 254
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 38.3 bits (85), Expect = 0.002
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Frame = +1
Query: 244 LMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV---EYKNISFTVWDVGGQDKI 405
+++G A GK++++ + + TIG F +T+ E ++ +WD GQ++
Sbjct: 18 VLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERY 77
Query: 406 RPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAM 585
+ L Y++N I V D + +A+ ++ L V+ + NK DL
Sbjct: 78 KSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAPEGIVIALAGNKLDLAQER 136
Query: 586 NAAEITD 606
A E D
Sbjct: 137 RAVEKAD 143
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 37.5 bits (83), Expect = 0.004
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = +1
Query: 244 LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDKIR 408
++VG GKTT + + GE I T+G V + + I F VWD GQ+K+
Sbjct: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLG 72
Query: 409 PLWRHYFQNTQGLIFVVDSNDR 474
L Y+ Q I + D R
Sbjct: 73 GLRDGYYIQGQCGIIMFDVTSR 94
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 36.3 bits (80), Expect = 0.008
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +1
Query: 247 MVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRP 411
M+G + GKT+++ G + T+G N +T+ +N I+F++WD+GGQ +
Sbjct: 15 MIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVN 74
Query: 412 LWRHYFQNTQGLIFVVDSNDRERIGEARE 498
+ + ++F+ D + + + +E
Sbjct: 75 MLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 35.1 bits (77), Expect = 0.019
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = +1
Query: 244 LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQDKIRP 411
++VG A GKT++L LG T +PT+ N + V+ K++ +WD GQ++
Sbjct: 12 VVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYER 71
Query: 412 LWRHYFQNTQGLI--FVVDSND 471
L + ++ F +DS D
Sbjct: 72 LRPMSYAKAHIILVGFAIDSPD 93
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 34.7 bits (76), Expect = 0.025
Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
Frame = +1
Query: 226 KKXMSXLMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVG 390
K + +++G GKT+I+ + + TIG + T V+ K ++ +WD
Sbjct: 6 KHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTA 65
Query: 391 GQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDELRDAVLLIFAN 561
GQ++ + L +++ + V D N+ E + R+E + S ++ N
Sbjct: 66 GQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGN 125
Query: 562 KQDL 573
K D+
Sbjct: 126 KVDV 129
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 31.9 bits (69), Expect = 0.18
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Frame = +1
Query: 244 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF------TVWDVGGQDKI 405
L++G +GK+++ + + +G ++ +E+ ++ F +WD GGQ+
Sbjct: 6 LLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATID-IEHSHVRFLGNLVLNLWDCGGQEAF 64
Query: 406 RPLW-----RHYFQNTQGLIFVVDSNDRE 477
+ H F+N Q LI+V D RE
Sbjct: 65 MENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 31.9 bits (69), Expect = 0.18
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Frame = +1
Query: 244 LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ---DK 402
++VG A GKT +L G +PT+ N V VE ++I +WD GQ D+
Sbjct: 10 VIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDYDR 69
Query: 403 IRPL 414
+RPL
Sbjct: 70 LRPL 73
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 31.1 bits (67), Expect = 0.31
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%)
Frame = +1
Query: 226 KKXMSXLMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 405
KK + ++G +GKT++ +L E TT+P+I N E V +K ++ V D+ G +
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN-EAV-WKYGAWLV-DLPGHPRA 91
Query: 406 RPLWRHYFQ---NTQGLIFVVDSNDRER-IGEAREELMRMLSEDELRDAV-LLIFANKQD 570
+ F N + ++FV++S +R + E L + + LLI NK D
Sbjct: 92 KRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTILKCRKHHVPHLLIACNKFD 151
Query: 571 LPNAMNAAEITD--KLGLHS-LRNRNWYIQATCATSGD 675
L A A +I K LH+ L +N +++ + D
Sbjct: 152 LFTAQPAEKIQQLLKAELHNILEEKNLQLESIVSEDVD 189
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 30.7 bits (66), Expect = 0.41
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = +1
Query: 244 LMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQDKIRP 411
+++G AAGKT++L G PTI N V+ +I ++WD GQ++
Sbjct: 17 VILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQ 76
Query: 412 LWRHYFQNTQGLI--FVVDSND 471
L + +T ++ F VDS D
Sbjct: 77 LRSLSYSDTHVIMICFAVDSRD 98
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 30.7 bits (66), Expect = 0.41
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 349 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLS 519
V+ K ++ +WD GQ++ + L +++ + V + N+ + + R+E + S
Sbjct: 52 VDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTS 111
Query: 520 EDE 528
+DE
Sbjct: 112 QDE 114
>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 28.7 bits (61), Expect = 1.6
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Frame = +1
Query: 460 DSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQ------DLPNAMNAAEITDKLGL- 618
D ND + + R+ +++L + VL + KQ +L +A N E+ + L
Sbjct: 46 DENDSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRDAQNFLEMQEANSLD 105
Query: 619 HSLRNRNWYIQATCATSGDGLYEG--LDWLSNQLKN-ANR*PYVRQLADKS 762
+S+R N ++ AT D Y+ L ++N++ A P++ Q+ K+
Sbjct: 106 NSIRGTNELLERAYATREDFDYQNSVLGNVTNRINGAAMSIPFINQILRKT 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,977,020
Number of Sequences: 5004
Number of extensions: 79937
Number of successful extensions: 250
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 627537330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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