Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_C22
         (1214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   5.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   6.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 376 KTPPPXPPPGXXXEKXPPXG 435
           K PPP PPP       PP G
Sbjct: 309 KRPPPPPPPSRRNRGKPPIG 328


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 338 PPXGGPXXPGGXXKPPPPXPPXGXTG 415
           PP   P   G    PPPP PP    G
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = -2

Query: 565 VXAPPPXXAXGXXXXXFXXPXVXXPPPPXSGXGGXPXPPGXPXXXXG 425
           +  PPP    G        P    PPP  +G G  P PP  P    G
Sbjct: 749 IPVPPPAPIMGG-------PPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -3

Query: 582 PXXGGXXXPPPPXGPXGXXAPVXXAP 505
           P  GG   PPPP G  G   P    P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 338 PPXGGPXXPGGXXKPPPPXPP 400
           PP   P    G   PPPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 380 PPPPXPPXGXTGKKXPXXXXXXP 448
           PPPP PP G  G   P      P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 341 PXGGPXXPGGXXKPPPPXPP 400
           P  G    GG   PPPP PP
Sbjct: 295 PSSGDSANGGLPPPPPPPPP 314


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 382 PPPXPPPGXXXEKXPP 429
           PPP PPPG      PP
Sbjct: 10  PPPPPPPGFEPPSQPP 25



 Score = 23.0 bits (47), Expect(2) = 9.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 380 PPPPXPPXGXTGKKXP 427
           PPPP PP G      P
Sbjct: 9   PPPPPPPPGFEPPSQP 24



 Score = 21.0 bits (42), Expect(2) = 9.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 362 PGGXXKPPPPXP 397
           P G   PPPP P
Sbjct: 5   PPGNPPPPPPPP 16


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,269,636
Number of Sequences: 5004
Number of extensions: 15998
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)