Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_C21
         (1185 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...   147   3e-36
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...   147   3e-36
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...   147   3e-36
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    49   1e-06
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    27   6.7  

>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  147 bits (356), Expect = 3e-36
 Identities = 69/83 (83%), Positives = 77/83 (92%)
 Frame = +1

Query: 124 AXRHRKVLXDNXQGXTKPAIRXLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTE 303
           A RHRK+L DN QG TKPAIR LARRGGVKRIS L+YEETR+VLK+FLENVIRDAVTYTE
Sbjct: 16  AKRHRKILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTE 75

Query: 304 HAKRKTVTAMDVVYALKRQGRTL 372
           HAKRKTVT++DVVY+LKRQGRT+
Sbjct: 76  HAKRKTVTSLDVVYSLKRQGRTI 98


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  147 bits (356), Expect = 3e-36
 Identities = 69/83 (83%), Positives = 77/83 (92%)
 Frame = +1

Query: 124 AXRHRKVLXDNXQGXTKPAIRXLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTE 303
           A RHRK+L DN QG TKPAIR LARRGGVKRIS L+YEETR+VLK+FLENVIRDAVTYTE
Sbjct: 16  AKRHRKILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTE 75

Query: 304 HAKRKTVTAMDVVYALKRQGRTL 372
           HAKRKTVT++DVVY+LKRQGRT+
Sbjct: 76  HAKRKTVTSLDVVYSLKRQGRTI 98


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score =  147 bits (356), Expect = 3e-36
 Identities = 69/83 (83%), Positives = 77/83 (92%)
 Frame = +1

Query: 124 AXRHRKVLXDNXQGXTKPAIRXLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTE 303
           A RHRK+L DN QG TKPAIR LARRGGVKRIS L+YEETR+VLK+FLENVIRDAVTYTE
Sbjct: 16  AKRHRKILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTE 75

Query: 304 HAKRKTVTAMDVVYALKRQGRTL 372
           HAKRKTVT++DVVY+LKRQGRT+
Sbjct: 76  HAKRKTVTSLDVVYSLKRQGRTI 98


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 22/60 (36%), Positives = 34/60 (56%)
 Frame = +1

Query: 181 IRXLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 360
           IR LA     K+I+G + EE  +  ++F + +  D   + +HA RKT+   DVV  +KRQ
Sbjct: 391 IRKLANSYSQKKIAGSVIEELTTASELFFKQIANDLSAFADHAHRKTIDTQDVVLLMKRQ 450


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 229 IYEETRSVLKVFLEN-VIRDAVTYTEHAKRKTVTAMDVVYALKRQG 363
           I +ET  VL    E+  I D+ T T+  KRK V    ++Y   R+G
Sbjct: 132 ITDETPKVLSEIKEHGTISDSKTLTDLKKRKLVERNKIMYFSLRKG 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,757,322
Number of Sequences: 5004
Number of extensions: 25748
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 637498240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)