Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_C17
(1222 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy... 97 4e-21
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 33 0.11
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 29 1.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 2.3
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 28 3.0
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 3.0
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 4.0
SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe... 27 5.3
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 26 9.2
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 9.2
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 26 9.2
>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 97.1 bits (231), Expect = 4e-21
Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 1/168 (0%)
Frame = +1
Query: 265 IXECHKQIESLTNEVNSIKEQFNDINDKYKRALADGENVRKRMLKQVEDAKSFAIQSFCK 444
+ E ++ L ++ + ++ ++ +++LAD N+ RM + +E ++FA+Q K
Sbjct: 53 VKELQSKLSELKSKYEAKDKEVAELKGSIRQSLADYRNLENRMKRDMEQTRAFAVQKLTK 112
Query: 445 DLLEVADTLTXXXXXXXXXXXXXXXXXX-LRALHDGVRLTRAQLGQVFARHGLVPVSPLR 621
DLL+ D L L L++G+ +T + L + ++GLV +
Sbjct: 113 DLLDSVDNLERALSIVPEEKRNNRESNKDLVDLYEGLAMTESNLMKTLGKYGLVRYDGIG 172
Query: 622 EKFDPNLHEALFQQEVEGAESGTVVAVSKVGYKLHERCVRPALVGVAK 765
E FDPN+HEA+FQ VEG + TV G++L+ R +RPA VGV K
Sbjct: 173 EDFDPNIHEAVFQIPVEGKKPNTVFHCESKGFQLNGRVIRPAKVGVVK 220
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/60 (25%), Positives = 36/60 (60%)
Frame = +1
Query: 244 NDKLPATIXECHKQIESLTNEVNSIKEQFNDINDKYKRALADGENVRKRMLKQVEDAKSF 423
N +L A + EC I+SLT E+ + +E+ +++D + + + + + + +L +V D +++
Sbjct: 1112 NKELEAKVKECLNNIKSLTKELENKEEKCQNLSDASLKYI-ELQEIHENLLLKVSDLENY 1170
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 280 KQIESLTNEVNSIKEQFNDINDKYKRALADGENVRKRMLKQVED 411
++ E L+ + S++EQ+ I YK L D E+ R+ ++ +
Sbjct: 369 REKERLSEHLKSLQEQYEHIQSVYKNVLLDRESYIMRLGNKISE 412
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 286 IESLTNEVNSIKEQFNDINDKYKRALADGENVRKR 390
+ LTNE+ +K+++ ++D+Y +L G + KR
Sbjct: 716 VNQLTNELMELKKRYEKLSDRY-NSLTPGYHKHKR 749
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 280 KQIESLTNEVNSIKEQFNDINDKYKRALADGENVRKRMLKQVEDAKSFAIQS 435
K+ + N IKE I DK+K AL+D +NV K D IQ+
Sbjct: 3110 KEKSRIENGFKKIKETSQGI-DKFKEALSDQQNVLFSKTKTANDRLQCIIQT 3160
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 244 NDKLPATIXECHKQIESLTNEVNSIKEQFNDINDKYKR 357
N KL ++ +++E+ T E+N IK + + +D++KR
Sbjct: 163 NTKLKDSMETMKRRMETETKEMNKIKPKNDSESDRFKR 200
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 283 QIESLTNEVNSIKEQFNDINDKYKRALADGENVRKRMLKQVEDA--KSFAIQSFCKD 447
+I + ++ S++ + D+N + + + E+ K + KQ+EDA + + SF KD
Sbjct: 997 EISTREEKITSLRSELLDLNKRVEVLKEEKESSSKELAKQLEDAVREKDSALSFKKD 1053
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
Frame = +1
Query: 286 IESLTNEVNSIKEQFND-----INDKYKRALADGENVRKR 390
I+++ NE+N +++Q ND ++DK+ ++ + VRK+
Sbjct: 157 IDTIRNELNELRDQLNDSESKKLSDKFVEIRSELDEVRKQ 196
>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 104
Score = 27.1 bits (57), Expect = 5.3
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +1
Query: 265 IXECHKQIESLTNEVNSIKEQFND--INDKYKRALADGENVRKRMLKQVEDAKSFAIQ 432
+ ECHK E N+IK + D+ +A + EN R R E+ K I+
Sbjct: 20 LEECHKSFGKFFGECNTIKYELKACLTKDRNDKARLNRENARMRKKVIEENRKKEEIE 77
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 732 MRQTSFGWGGEINVKTKKNK*NSQFNPNHHHSSVWTGLIVVE 857
M + FG +++ K K+++ S+ N + + SSV G +++E
Sbjct: 216 MPECQFGLNDKLDFKLKQSESKSKSNNSRNPSSVNGGFVILE 257
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 423 KGLGVFDLFQHPLPYILAVR 364
KGLGV F + PYILA++
Sbjct: 786 KGLGVIKKFDNTKPYILALK 805
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 277 HKQIESLTNEVNSIKEQFNDINDKYK 354
H + + +E+N +K Q N+I +K K
Sbjct: 213 HPEFQLFLDELNQLKPQLNEIKEKLK 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,584,500
Number of Sequences: 5004
Number of extensions: 59285
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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