Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_C17
(1222 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0277 - 15226062-15226169,15227075-15227203,15227416-152275... 115 9e-26
09_02_0243 - 6192324-6192443,6193246-6193374,6193528-6193695,619... 113 2e-25
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 53 5e-07
04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786 48 1e-05
02_02_0069 + 6540364-6540878,6541332-6541406,6541818-6541896 33 0.60
03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88... 30 4.2
08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364... 29 5.6
01_01_1102 - 8734984-8736090,8736430-8736557,8736671-8736708,873... 29 5.6
05_07_0071 - 27481876-27482737,27484328-27484950 29 7.4
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 29 7.4
09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616 29 9.8
04_04_0893 - 29152150-29153156,29153234-29153561,29153645-291538... 29 9.8
>08_02_0277 -
15226062-15226169,15227075-15227203,15227416-15227583,
15227665-15228123,15228865-15229008
Length = 335
Score = 115 bits (276), Expect = 9e-26
Identities = 66/160 (41%), Positives = 87/160 (54%), Gaps = 7/160 (4%)
Frame = +1
Query: 307 VNSIKEQFNDINDKYKRALADGENVRKRMLKQVEDAKSFAIQSFCKDLLEVADTLTXXXX 486
+ S E+ D+ DK R+ A+ ENV R ++ ++AK +A+Q F K LL+VAD L+
Sbjct: 160 LKSKDEEVKDMKDKVLRSYAEMENVIARTKRESDNAKKYAVQGFSKSLLDVADNLSRASS 219
Query: 487 XXXXXXXXXXXXXX-------LRALHDGVRLTRAQLGQVFARHGLVPVSPLREKFDPNLH 645
L L +GV +T QLG+VF + G+ PL EKFDPN H
Sbjct: 220 VVKESFSKIDTSNESAEAVKLLNTLLEGVEMTEKQLGEVFKKFGVEKFDPLNEKFDPNKH 279
Query: 646 EALFQQEVEGAESGTVVAVSKVGYKLHERCVRPALVGVAK 765
ALFQ SGTV AV KVGY LH+R +RPA VGV +
Sbjct: 280 AALFQIPDPSKPSGTVAAVVKVGYMLHDRVLRPAEVGVTE 319
>09_02_0243 -
6192324-6192443,6193246-6193374,6193528-6193695,
6193833-6194023,6194137-6194281,6195307-6195462
Length = 302
Score = 113 bits (273), Expect = 2e-25
Identities = 65/160 (40%), Positives = 90/160 (56%), Gaps = 7/160 (4%)
Frame = +1
Query: 307 VNSIKEQFNDINDKYKRALADGENVRKRMLKQVEDAKSFAIQSFCKDLLEVADTLTXXXX 486
+ S E+ ND+ DK R+ A+ ENV R ++ E++K +A+Q+F K LL+VAD LT
Sbjct: 123 LKSKDEEINDMKDKVLRSYAEMENVIARTKRESENSKKYAVQNFSKSLLDVADNLTRASS 182
Query: 487 XXXXXXXXXXXXXX-------LRALHDGVRLTRAQLGQVFARHGLVPVSPLREKFDPNLH 645
L+ L +GV +T QLG+VF + G+ PL EKFDP+ H
Sbjct: 183 VVKESFSKIDTSKDSTGAVPLLKTLLEGVDMTDKQLGEVFKKFGVEKFDPLNEKFDPSRH 242
Query: 646 EALFQQEVEGAESGTVVAVSKVGYKLHERCVRPALVGVAK 765
A+FQ SGTV +V KVGY LH+R +RPA VGV +
Sbjct: 243 CAIFQIPDPSKPSGTVASVVKVGYMLHDRVLRPAEVGVTE 282
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 52.8 bits (121), Expect = 5e-07
Identities = 38/157 (24%), Positives = 69/157 (43%)
Frame = +1
Query: 292 SLTNEVNSIKEQFNDINDKYKRALADGENVRKRMLKQVEDAKSFAIQSFCKDLLEVADTL 471
SL ++++++ + D+ R AD +N RKR+ ++ + + LL V D
Sbjct: 166 SLLSKISTLGAELTTERDRILRISADFDNYRKRVEREKLSLMTNVQGEVIESLLPVLDNF 225
Query: 472 TXXXXXXXXXXXXXXXXXXLRALHDGVRLTRAQLGQVFARHGLVPVSPLREKFDPNLHEA 651
++D + Q + G+ V + + FDP LHEA
Sbjct: 226 ERAKTQIKVETEQETK------INDSYQSIYKQFIDILNSLGVEDVETVGKPFDPMLHEA 279
Query: 652 LFQQEVEGAESGTVVAVSKVGYKLHERCVRPALVGVA 762
+ ++E E G ++ + G+KL ER +RPA+V V+
Sbjct: 280 IMREESVEYEEGVILQEFRKGFKLGERLLRPAMVKVS 316
>04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786
Length = 290
Score = 48.0 bits (109), Expect = 1e-05
Identities = 42/170 (24%), Positives = 71/170 (41%)
Frame = +1
Query: 253 LPATIXECHKQIESLTNEVNSIKEQFNDINDKYKRALADGENVRKRMLKQVEDAKSFAIQ 432
+ + I K+ + + SI + DK+ R AD EN RK+ K+ S
Sbjct: 101 IESAIIAIEKERSNSAAQYESIATEITSGKDKFLRINADLENFRKQTEKERARFTSNIQV 160
Query: 433 SFCKDLLEVADTLTXXXXXXXXXXXXXXXXXXLRALHDGVRLTRAQLGQVFARHGLVPVS 612
+ LL + D+ + + G+ QL + G+ V
Sbjct: 161 DVVQSLLTLVDSFEKVNQEITPETDKEQT---ISTSYQGIY---KQLVETLRSLGVGVVE 214
Query: 613 PLREKFDPNLHEALFQQEVEGAESGTVVAVSKVGYKLHERCVRPALVGVA 762
+ + FDP++HEA+ ++E ++G V K G+ L ER +RPA V V+
Sbjct: 215 TVGKPFDPSIHEAIAREESHQFKAGIVSHEVKRGFLLRERLLRPATVKVS 264
>02_02_0069 + 6540364-6540878,6541332-6541406,6541818-6541896
Length = 222
Score = 32.7 bits (71), Expect = 0.60
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +2
Query: 476 LQQRAYQRERGRRPRAAPYEPCTTVCDSRGLN*DRCSRGTAWSRCLPSARNSTRIYMKHY 655
L ++ R+ RR R+ P+ P V R R R W+RCL + ++ + Y Y
Sbjct: 3 LVDQSCDRQNPRRHRSDPHSPARGVVWGRRGG-GRRQRRKRWARCLDAVDDAEKDYKYTY 61
Query: 656 SSRKWRAPS 682
S K PS
Sbjct: 62 SIEKHDEPS 70
>03_01_0111 +
884501-884970,885069-885147,885530-885574,885838-885903,
886362-886420,886626-886701,886825-886956,887046-887153,
887679-887733,887822-888042
Length = 436
Score = 29.9 bits (64), Expect = 4.2
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 562 RAQLGQVFARHGLVPVSPLREKF 630
+ +LG++F RHG+ P++PL+ F
Sbjct: 231 KRKLGELFLRHGVTPLTPLKGLF 253
>08_02_1571 -
27935756-27935950,27936048-27936199,27936294-27936403,
27936845-27937050,27937212-27937295,27937367-27937525,
27937621-27937728,27938103-27938278,27938376-27938462,
27938546-27938657,27938737-27938817,27938890-27938943,
27939107-27939183,27939262-27939331,27939552-27939666,
27939840-27939937,27940041-27940179,27940267-27940868,
27941270-27941399,27941471-27941529
Length = 937
Score = 29.5 bits (63), Expect = 5.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 283 QIESLTNEVNSIKEQFNDINDKYKRALADGENVRKRM 393
QIE +T + + ++Q ND+ +KY L ++ K++
Sbjct: 435 QIEQMTTSLEANQKQINDLQEKYDSELQHSADLSKKL 471
>01_01_1102 -
8734984-8736090,8736430-8736557,8736671-8736708,
8736815-8737030,8737252-8737413,8738381-8738559,
8738693-8738799,8738918-8739082,8739201-8739284,
8739364-8739559
Length = 793
Score = 29.5 bits (63), Expect = 5.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 680 SQAQWWPSVRSATNCTRDASD 742
S W PS+R T C++DAS+
Sbjct: 575 SDMNWTPSIRDGTECSQDASE 595
>05_07_0071 - 27481876-27482737,27484328-27484950
Length = 494
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 552 ATHEGSTRTGVRAARPGPGVSPPREIRP 635
A+ +T T AA P P V+PPR RP
Sbjct: 142 ASPSHATATASPAAAPSPAVAPPRVFRP 169
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 256 PATIXECHKQIESLTNEVNSIKEQFNDINDKYKRALADGENVR 384
P + E Q+ L +E+ KEQ +RAL + E+ R
Sbjct: 167 PTKLSELESQLSQLQDELKKAKEQLLSTEHSKRRALQEAEDAR 209
>09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616
Length = 695
Score = 28.7 bits (61), Expect = 9.8
Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +3
Query: 369 RREC-TEEDVETSRRRQVLCHTELL 440
R+EC TEED E +R++Q HT+++
Sbjct: 364 RKECFTEEDSENARQKQSFNHTDMV 388
>04_04_0893 -
29152150-29153156,29153234-29153561,29153645-29153879,
29154149-29154194,29154579-29154711
Length = 582
Score = 28.7 bits (61), Expect = 9.8
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 593 TAWSRCLPSARNSTRI-YMKHYSSRKWRAPSQAQWW 697
+ W+ L S NST + YS R+WR WW
Sbjct: 26 STWAPTLASHTNSTYFGKQEEYSVREWRPGGDLCWW 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,259,800
Number of Sequences: 37544
Number of extensions: 438454
Number of successful extensions: 1260
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3747967944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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