Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_C15
         (1272 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VBP9 Cluster: CG4673-PA, isoform A; n=8; Endopterygot...    53   1e-05
UniRef50_Q63ZR4 Cluster: LOC494816 protein; n=3; Xenopus|Rep: LO...    51   6e-05
UniRef50_UPI0000D9E56B Cluster: PREDICTED: similar to Nuclear pr...    49   3e-04
UniRef50_Q8TAT6 Cluster: Nuclear protein localization protein 4 ...    49   3e-04
UniRef50_A3CP18 Cluster: ABC-type antimicrobial peptide transpor...    36   1.7  
UniRef50_Q9P780 Cluster: Cdc48-Ufd1-Npl4 complex component Npl4;...    36   2.2  
UniRef50_A5DBC9 Cluster: Putative uncharacterized protein; n=1; ...    35   3.9  
UniRef50_A3C0K6 Cluster: Putative uncharacterized protein; n=1; ...    35   5.2  
UniRef50_A4FAR0 Cluster: Transcriptional regulator; n=2; Actinom...    34   9.0  

>UniRef50_Q9VBP9 Cluster: CG4673-PA, isoform A; n=8;
           Endopterygota|Rep: CG4673-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 652

 Score = 53.2 bits (122), Expect = 1e-05
 Identities = 30/79 (37%), Positives = 44/79 (55%)
 Frame = +1

Query: 607 RKLLRVQSPEGTARVEVLDSDVTAHLFERIYEALNLNSFAFTLHKDRQRXEEITSSKSRQ 786
           + L+RVQS EG  R+E+       HL++ +  AL ++ F   L K+R    E+ +S S Q
Sbjct: 33  QSLIRVQSAEGIKRIEISPKSNLKHLYDSVQNALKVDGFG--LFKERNFLTELQASGS-Q 89

Query: 787 LRDCGLCHGDMIYLNPVNG 843
           L    L HGDM+YL  + G
Sbjct: 90  LVGTSLRHGDMVYLKQMAG 108


>UniRef50_Q63ZR4 Cluster: LOC494816 protein; n=3; Xenopus|Rep:
           LOC494816 protein - Xenopus laevis (African clawed frog)
          Length = 610

 Score = 51.2 bits (117), Expect = 6e-05
 Identities = 21/78 (26%), Positives = 44/78 (56%)
 Frame = +1

Query: 613 LLRVQSPEGTARVEVLDSDVTAHLFERIYEALNLNSFAFTLHKDRQRXEEITSSKSRQLR 792
           ++R+QSP+G  R+     +      +++ +     +  F+++ +R R  EI++S+++ L 
Sbjct: 6   VIRIQSPDGVKRINASKRETAVMFLKKVAKEFGFTNNRFSVYVNRNRTGEISASQNKSLH 65

Query: 793 DCGLCHGDMIYLNPVNGA 846
              + HGDM++L P N A
Sbjct: 66  FLKIKHGDMLFLFPSNSA 83


>UniRef50_UPI0000D9E56B Cluster: PREDICTED: similar to Nuclear
           protein localization protein 4 homolog (Protein NPL4);
           n=1; Macaca mulatta|Rep: PREDICTED: similar to Nuclear
           protein localization protein 4 homolog (Protein NPL4) -
           Macaca mulatta
          Length = 323

 Score = 48.8 bits (111), Expect = 3e-04
 Identities = 20/74 (27%), Positives = 42/74 (56%)
 Frame = +1

Query: 613 LLRVQSPEGTARVEVLDSDVTAHLFERIYEALNLNSFAFTLHKDRQRXEEITSSKSRQLR 792
           ++RVQSP+G  R+     +  A   +++ +     +  F+++ +R +  EIT+S ++ L 
Sbjct: 200 IIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSNKSLN 259

Query: 793 DCGLCHGDMIYLNP 834
              + HGD+++L P
Sbjct: 260 LLKIKHGDLLFLFP 273


>UniRef50_Q8TAT6 Cluster: Nuclear protein localization protein 4
           homolog; n=42; Eumetazoa|Rep: Nuclear protein
           localization protein 4 homolog - Homo sapiens (Human)
          Length = 608

 Score = 48.8 bits (111), Expect = 3e-04
 Identities = 20/74 (27%), Positives = 42/74 (56%)
 Frame = +1

Query: 613 LLRVQSPEGTARVEVLDSDVTAHLFERIYEALNLNSFAFTLHKDRQRXEEITSSKSRQLR 792
           ++RVQSP+G  R+     +  A   +++ +     +  F+++ +R +  EIT+S ++ L 
Sbjct: 6   IIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSNKSLN 65

Query: 793 DCGLCHGDMIYLNP 834
              + HGD+++L P
Sbjct: 66  LLKIKHGDLLFLFP 79


>UniRef50_A3CP18 Cluster: ABC-type antimicrobial peptide transport
           system, permease component, putative; n=37;
           Streptococcus|Rep: ABC-type antimicrobial peptide
           transport system, permease component, putative -
           Streptococcus sanguinis (strain SK36)
          Length = 422

 Score = 36.3 bits (80), Expect = 1.7
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = +1

Query: 547 SFIHINLEKIXTSRXVFFSGRKLLRVQSPEGTARVEVLDSDVTAHLFERIYEALN 711
           +F+  N+  I   +    +GR L R Q  +G A V +LD D+ A+LF    EA+N
Sbjct: 133 NFVGANMTYIQVKKYKIIAGRAL-RQQDYQGFASVVLLDEDLAANLFSSAEEAIN 186


>UniRef50_Q9P780 Cluster: Cdc48-Ufd1-Npl4 complex component Npl4;
           n=1; Schizosaccharomyces pombe|Rep: Cdc48-Ufd1-Npl4
           complex component Npl4 - Schizosaccharomyces pombe
           (Fission yeast)
          Length = 545

 Score = 35.9 bits (79), Expect = 2.2
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = +1

Query: 613 LLRVQSPEGTARVEVLDSDVTAHLFERIYEALNLNSFA---FTLHKDRQRXEEITSSKSR 783
           +LR +S  G AR E   +D  A L  +I   +  N ++    +L ++      I S+ + 
Sbjct: 2   ILRFRSKRGMARAEFQPTDTLAMLSAKILSDILKNDYSPENVSLCQNESDQGVIFSNLND 61

Query: 784 Q-LRDCGLCHGDMIYL 828
           Q L+D GL HG M+YL
Sbjct: 62  QTLQDAGLTHGQMLYL 77


>UniRef50_A5DBC9 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 564

 Score = 35.1 bits (77), Expect = 3.9
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = +1

Query: 598 FSGRKLLRVQSPEGTARV----EVLDSDVTAHLFERIYEALNLNSFAFTLHKDRQRXEEI 765
           F   +++R ++P G  RV    E   +D+   L  ++ E+ +L+SF F+  K   +    
Sbjct: 21  FQLTQIIRFRTPSGMLRVNATPETAFNDLLNDLGNQMGES-DLSSFTFS-DKPNDKGSSA 78

Query: 766 TSSKSRQLRDCGLCHGDMIYL 828
            +   + + D GL HGDM+Y+
Sbjct: 79  NTFHGKSVADLGLKHGDMLYV 99


>UniRef50_A3C0K6 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 215

 Score = 34.7 bits (76), Expect = 5.2
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 630 TRRYSASGGAGLRCDGASIRANIRSSESELFRIHSAQGQTAXGRNHIQQ-IETAARL 797
           +R   +S G G RC G  +R +  SS  +   +H A+ + A  R+H+ + I TAA L
Sbjct: 117 SRPARSSPGLGWRCPGRRLRTSRGSSRVQRLALHGARERDAALRSHLSRYISTAAAL 173


>UniRef50_A4FAR0 Cluster: Transcriptional regulator; n=2;
           Actinomycetales|Rep: Transcriptional regulator -
           Saccharopolyspora erythraea (strain NRRL 23338)
          Length = 307

 Score = 33.9 bits (74), Expect = 9.0
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 616 LRVQSPEGTARVEVLDSDVTAHLFERIYEALNLNSFAFTLHKDRQRXEEITSSKSRQLRD 795
           LRV  P  +  +  L++++   LF+R    + LN F  TL +  +R  +      R+L D
Sbjct: 25  LRVSQPSLSRTIARLETELGVPLFDRRGRHVRLNRFGATLLRRVERALDELEQGRRELAD 84

Query: 796 -CGLCHGDM 819
             GL HG +
Sbjct: 85  AAGLAHGSV 93


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 836,923,126
Number of Sequences: 1657284
Number of extensions: 12920223
Number of successful extensions: 33795
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32685
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 129579762880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)