Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_C15
         (1272 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    36   0.012
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   9.7  

>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = +1

Query: 613 LLRVQSPEGTARVEVLDSDVTAHLFERIYEALNLNSFA---FTLHKDRQRXEEITSSKSR 783
           +LR +S  G AR E   +D  A L  +I   +  N ++    +L ++      I S+ + 
Sbjct: 2   ILRFRSKRGMARAEFQPTDTLAMLSAKILSDILKNDYSPENVSLCQNESDQGVIFSNLND 61

Query: 784 Q-LRDCGLCHGDMIYL 828
           Q L+D GL HG M+YL
Sbjct: 62  QTLQDAGLTHGQMLYL 77


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 322  TQHLNKIRIIPSYHIYNHT 378
            T +++K+ I P Y I+NHT
Sbjct: 2080 TNYVSKVMIYPPYVIFNHT 2098


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,376,543
Number of Sequences: 5004
Number of extensions: 52725
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)