Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_C15
         (1272 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024207-2|AAL77193.1|  425|Caenorhabditis elegans Hypothetical ...    29   5.3  
AC024207-1|AAL77194.1|  428|Caenorhabditis elegans Hypothetical ...    29   5.3  
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass...    29   9.3  
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass...    29   9.3  

>AC024207-2|AAL77193.1|  425|Caenorhabditis elegans Hypothetical
           protein Y74E4A.1a protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 640 TARVEVLDSDVTAHLFERIYEALNLNSFAFTLHKDRQ 750
           T  V+VLD  +T      +++ +N+N F     KDR+
Sbjct: 79  TLEVQVLDGSITEMWMNEVFKEMNINGFLKLSWKDRR 115


>AC024207-1|AAL77194.1|  428|Caenorhabditis elegans Hypothetical
           protein Y74E4A.1b protein.
          Length = 428

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 640 TARVEVLDSDVTAHLFERIYEALNLNSFAFTLHKDRQ 750
           T  V+VLD  +T      +++ +N+N F     KDR+
Sbjct: 79  TLEVQVLDGSITEMWMNEVFKEMNINGFLKLSWKDRR 115


>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform b protein.
          Length = 1321

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -3

Query: 433 EKKVRNFMD*--KLXKDNERLYDYKC 362
           EKK  NF+    K  K N+++YDY+C
Sbjct: 160 EKKTSNFLQFQFKFLKKNKKMYDYRC 185


>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform a protein.
          Length = 1372

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -3

Query: 433 EKKVRNFMD*--KLXKDNERLYDYKC 362
           EKK  NF+    K  K N+++YDY+C
Sbjct: 160 EKKTSNFLQFQFKFLKKNKKMYDYRC 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,357,156
Number of Sequences: 27780
Number of extensions: 327463
Number of successful extensions: 1113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3547715720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)