Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_C14
         (1211 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   4.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   5.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 609  GLNSLFTDLLNFDDPLNIEAAEMYNKDKVQFQVKVQEYISK 731
            GL SL +++ N D  L++   +   K K+  + K+ EY+ K
Sbjct: 1355 GLFSL-SEIDNLDVSLDVSNPKNAGKKKIDVRAKLNEYLDK 1394


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 1001 LHP*HIKINLTSVFFKPXLYXNKHSXRHKCN*IIMIVCSERYDKPKFSYMVKA 843
            ++P  I    T + +KP L   + S  H+ N   M  CS+R      +  VKA
Sbjct: 844  IYPPVIGTPSTGMMYKPFLIPEQTSISHENNQPTMNKCSDRKRPASQATSVKA 896


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 889 VLSAMINLNFHIW*KPKFNPNSKYIFGHKNF 797
           ++S++ N   H     K+N N+KY + + N+
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNKYNYNNNNY 111


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +1

Query: 715 RNIFQRGKDETGLNSVATHFSSD*LKRKSFCVQKCTLN 828
           R++    K ETG+  V    SSD LK  +F V K TLN
Sbjct: 753 RHLVTLDKQETGVTLVVQEISSDGLK-FAFDV-KTTLN 788


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,588
Number of Sequences: 438
Number of extensions: 4248
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41452344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)