Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_C13
(1165 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 30 0.53
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch... 30 0.71
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch... 29 1.6
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|... 28 2.2
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 28 2.2
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 3.8
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 5.0
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch... 27 6.6
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 8.7
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 26 8.7
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 30.3 bits (65), Expect = 0.53
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 592 YVNQLQIKGLNFLPENYTLPDNLELWLNMKNLDCF 696
++NQ G FLP T D +E+W + +DCF
Sbjct: 1715 FLNQNDYPGATFLP---TADDQVEIWNKLSYIDCF 1746
>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 311
Score = 29.9 bits (64), Expect = 0.71
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +1
Query: 592 YVNQLQIKG--LNFLPENYTLPDNLELWLNMKNLDCFGRFEWSQKHGVEIDLSL-DDDND 762
++++ Q+KG LN PE LPD+ W ++ L G+ +W ++ + ID L D D
Sbjct: 204 WISERQVKGGGLNGRPEK--LPDSCYGWWDLSPLAIIGKLDWIDRNQL-IDFLLGTQDAD 260
Query: 763 IGIF 774
G F
Sbjct: 261 SGGF 264
>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 150
Score = 28.7 bits (61), Expect = 1.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 93 ACINRWWLKISIIPRFYHLGILRIPYR 13
A I WW+ + ++P F+ L +PY+
Sbjct: 45 ALIQTWWVLLGLLPIFFALEHYEVPYK 71
>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 763 IGIFENLLGHVNKLCEDNQEIDLGLTVNEKRDTQQLD 873
IG+F L+G + + DN DL + N+K+D LD
Sbjct: 159 IGMFLWLMGWLGNMYHDNILYDLRRSSNKKKDPDNLD 195
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 28.3 bits (60), Expect = 2.2
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Frame = +1
Query: 292 AIKLLKDIENFVGILPEKNNDYLPTRQMLEYILVRLMTFSKIMVRICICTKQAAIFYLNR 471
A+ +L I+ F +L + N + E + V +++ K + T ++
Sbjct: 547 AVVILTTIDAFKTVLDDWNFSENSFLSIKENLFVHVLSLFKAFESVDARTSILSLLGTLL 606
Query: 472 VKNGESYW-MSLTPYALLSRIWSLSLVLTKHAVRWYNSLHQYVNQLQIKGLNFLPENYTL 648
+ GE M T +LLS++W R +HQ+VN ++ K F YT+
Sbjct: 607 ARAGEHVAPMESTIASLLSQLWDGWKKEPLLRARVLAVMHQFVNAIKAKSFEFSTFLYTV 666
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 205 LVYKYDKKFRHDIGYRYFKKVNIGLKRYLA---IKLLKDIENFVGILPEKNNDYL-PTRQ 372
++ KYDK F +YFK+V+ + R + + +L+ + N + P + + + +++
Sbjct: 281 IILKYDKPFVTQYKEKYFKRVSRMISRLTSLTCVPMLRLLSNMISNFPNEVHQFANDSKR 340
Query: 373 MLEYILVRLMT 405
L + L+T
Sbjct: 341 PLSKLFSNLIT 351
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 823 FLDYLHRVYLHD 788
F D++HRVYLHD
Sbjct: 630 FYDFVHRVYLHD 641
>SPAC22F8.12c |shf1||small histone ubiquitination factor
Shf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 26.6 bits (56), Expect = 6.6
Identities = 28/90 (31%), Positives = 44/90 (48%)
Frame = +1
Query: 58 DANLQPPPVNTCSSETSADVKDLRHICNNIILILSRQSPLHREGAVFSRLVYKYDKKFRH 237
D N++ P +N S S+ ++ + C N S QS L+ E +++ V+ ++ K R
Sbjct: 88 DTNVELPKINLPDSSLSSKLQSCKSACEN-----SSQSLLNVE-QQYAQQVHFWE-KIRT 140
Query: 238 DIGYRYFKKVNIGLKRYLAIKLLKDIENFV 327
DI YR GL+ A+K L D N V
Sbjct: 141 DI-YRE------GLRSDAAVKSLNDFVNNV 163
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 169 SPLHREGAVFSRLVYKYDKKFRHDIGYRYFKKVN 270
S +H FS+++ KYDK + Y K+VN
Sbjct: 264 SYVHLNYTGFSKILKKYDKTLGSSLRESYMKRVN 297
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 772 FENLLGHVNKLCEDNQEIDLGLTVNE 849
F N +G V+ + ++NQE L LTV++
Sbjct: 580 FSNKIGVVHDISDENQEDHLNLTVHK 605
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,510,277
Number of Sequences: 5004
Number of extensions: 99268
Number of successful extensions: 277
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 623552966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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