Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_C13
         (1165 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    27   0.32 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   5.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   6.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   6.8  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   9.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   9.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 27.1 bits (57), Expect = 0.32
 Identities = 13/62 (20%), Positives = 33/62 (53%)
 Frame = +1

Query: 307 KDIENFVGILPEKNNDYLPTRQMLEYILVRLMTFSKIMVRICICTKQAAIFYLNRVKNGE 486
           +D++ F+   P KN+ Y  T+ +L  +++  +    ++  I +C    A+F + +++   
Sbjct: 20  QDVDGFLQGFPGKNSPYTVTQAILIALVLGSIIVGTVIGNILVC---VAVFLVRKLRRPC 76

Query: 487 SY 492
           +Y
Sbjct: 77  NY 78


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 580 SLHQYVNQLQIKGLNFLPENYTLPDNLEL 666
           SL +  +QL+IKGL  +PE+   P ++ L
Sbjct: 107 SLLKTADQLKIKGLCEVPESRDGPPSVSL 135


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 456 YCCLLCTYTYSHHNLRECH 400
           Y CLLC   +   NL + H
Sbjct: 62  YQCLLCQKAFDQKNLYQSH 80


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 535 TKFCSTMHMALKTSSNFLHSLLYSNKILLPALYIY 431
           TKFCST     K ++ F + L + +  ++   Y +
Sbjct: 451 TKFCSTEKRLTKQNTAFENQLQFVSDAVMAFAYAF 485


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 793 HDQVNSQIYQYHCHHLTISQSQHH 722
           H + +S +YQY C + T +    H
Sbjct: 35  HLKSHSNVYQYRCANCTYATKYCH 58


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 986 YTINIMLPTIAV 951
           YT+N++LPT+ +
Sbjct: 236 YTVNLILPTVLI 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,779
Number of Sequences: 438
Number of extensions: 6497
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39524328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)