Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_C11
         (1243 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   3.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
 Frame = -2

Query: 498 GGXXXXPXRXAGGXGXXGGG---TGGGPXXXPPXPGG 397
           GG    P    GG G  GGG    GGGP      PGG
Sbjct: 231 GGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 465 GGXGXXGGGTGGGPXXXPPXPGGW 394
           GG G  GGG+GG     PP PGG+
Sbjct: 188 GGFGGFGGGSGG----PPPGPGGF 207


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
 Frame = +2

Query: 797 ALPXTPPXXYPXPVXVVP-PXXGXXQKPPXXPXRXPLSGXXRXXXTXXKXXFSPXAXP 967
           +LP  PP         +P P  G    PP  P   P +G      +  +   +P A P
Sbjct: 335 SLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392



 Score = 23.4 bits (48), Expect(2) = 3.2
 Identities = 14/43 (32%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
 Frame = +2

Query: 779 PPWERGALPXTPPXXYPXPVXVVPPXXG--XXQKPPXXPXRXP 901
           PP  R A P  PP   P      PP         PP  P   P
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396



 Score = 22.6 bits (46), Expect(2) = 3.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 623 PPPPXXXQKXXPPIQXG 673
           PPPP    +  PPI  G
Sbjct: 314 PPPPSRRNRGKPPIGNG 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.148    0.493 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,922
Number of Sequences: 5004
Number of extensions: 17862
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 675349698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)