Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_C11
(1243 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 35 0.14
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 35 0.14
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 32 0.73
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 32 0.97
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 31 2.2
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 30 3.0
AF068713-16|AAD34663.1| 156|Caenorhabditis elegans Ground-like ... 30 3.9
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 5.2
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 29 5.2
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 29 6.8
AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical ... 29 6.8
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 6.8
Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical pr... 24 7.9
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 9.0
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 9.0
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 9.0
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 9.0
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 9.0
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 9.0
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 29 9.0
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 34.7 bits (76), Expect = 0.14
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -2
Query: 501 GGGXXXXPXRXAGGXGXXGGGTGGGPXXXPP 409
GGG P GG G GGG GGG PP
Sbjct: 45 GGGCAPPPAPCGGGCGGGGGGCGGGGGCAPP 75
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 501 GGGXXXXPXRXAGGXGXXGGGTGGG 427
GGG P GG G GGG GGG
Sbjct: 69 GGGCAPPPAPCGGGCGGGGGGCGGG 93
Score = 29.5 bits (63), Expect = 5.2
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Frame = -2
Query: 501 GGGXXXXPXRXAGGXGXXGGG--TGGGPXXXPPXPGG 397
GGG P GG GGG GGG PP P G
Sbjct: 44 GGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCG 80
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 34.7 bits (76), Expect = 0.14
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -2
Query: 501 GGGXXXXPXRXAGGXGXXGGGTGGGPXXXPP 409
GGG P GG G GGG GGG PP
Sbjct: 45 GGGCAPPPAPCGGGCGGGGGGCGGGGGCAPP 75
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 501 GGGXXXXPXRXAGGXGXXGGGTGGG 427
GGG P GG G GGG GGG
Sbjct: 69 GGGCAPPPAPCGGGCGGGGGGCGGG 93
Score = 29.5 bits (63), Expect = 5.2
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Frame = -2
Query: 501 GGGXXXXPXRXAGGXGXXGGG--TGGGPXXXPPXPGG 397
GGG P GG GGG GGG PP P G
Sbjct: 44 GGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCG 80
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 32.3 bits (70), Expect = 0.73
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 522 GNXXXPXGGGXXXXPXRXAGGXGXXGGGTGGG 427
GN GGG R GG G GGG GGG
Sbjct: 88 GNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGG 119
Score = 30.3 bits (65), Expect = 3.0
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = -2
Query: 543 GXXPXFXGNXXXPXGGGXXXXPXRXAGGXGXXGGGTGGG 427
G + GN GGG GG G GGG GGG
Sbjct: 76 GGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGG 114
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 31.9 bits (69), Expect = 0.97
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -2
Query: 519 NXXXPXGGGXXXXPXRXAGGXGXXGGGTGGGPXXXPPXPGG 397
N P GGG GG G GGG+G P PP GG
Sbjct: 184 NDFGPGGGGGGMG---GGGGSGGSGGGSGRFPPPPPPYGGG 221
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 30.7 bits (66), Expect = 2.2
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -2
Query: 561 GXKFFXGXXPXFXGNXXXPXGGGXXXXPXRXAGGXGXXGGGTGGG 427
G G F G GGG GG G GGG+GGG
Sbjct: 39 GGDILGGLASNFFGGGGGGGGGGGGGGFGGGNGGFGGGGGGSGGG 83
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 30.3 bits (65), Expect = 3.0
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 465 GGXGXXGGGTGGGPXXXPPXP 403
GG G GGG GGG PP P
Sbjct: 25 GGGGYSGGGGGGGDAAPPPPP 45
>AF068713-16|AAD34663.1| 156|Caenorhabditis elegans Ground-like
(grd related) protein31 protein.
Length = 156
Score = 29.9 bits (64), Expect = 3.9
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 465 GGXGXXGGGTGGGPXXXPPXP 403
GG G GGG GGG PP P
Sbjct: 31 GGCGGCGGGCGGGCGCAPPPP 51
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.5 bits (63), Expect = 5.2
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 501 GGGXXXXPXRXAGGXGXXGGGTGGGPXXXPPXP 403
GGG GG G GGG GG PP P
Sbjct: 26 GGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPP 58
Score = 29.5 bits (63), Expect = 5.2
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 501 GGGXXXXPXRXAGGXGXXGGGTGGGPXXXPPXP 403
GGG GG G GGG G G PP P
Sbjct: 82 GGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPP 114
Score = 29.1 bits (62), Expect = 6.8
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 501 GGGXXXXPXRXAGGXGXXGGGTGGGPXXXPPXP 403
GGG GG G GGG G G PP P
Sbjct: 25 GGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPP 57
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -2
Query: 501 GGGXXXXPXRXAGGXGXXGGGTGGGPXXXPPXP 403
GGG GG G GGG GGG PP P
Sbjct: 28 GGGGCGGGCGGGGGCGG-GGGCGGGCAPPPPPP 59
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 29.5 bits (63), Expect = 5.2
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = -2
Query: 534 PXFXGNXXXPXGGGXXXXPXRXAGGXGXXGGGTGGGPXXXPPXPGG 397
P GN P G G P GG G GG G G P PGG
Sbjct: 100 PGGPGNPGGPGGLGTPGGPG-TPGGPGNPGGLGGPGNPGGPGTPGG 144
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical
protein R08B4.1a protein.
Length = 1137
Score = 29.1 bits (62), Expect = 6.8
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -2
Query: 522 GNXXXPXGGGXXXXPXRXAGGXGXXGGGTGGG 427
G GGG GG G GGG GGG
Sbjct: 780 GGPTGSSGGGGGGSNSNSGGGGGNGGGGNGGG 811
>AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical
protein Y75B8A.8 protein.
Length = 715
Score = 29.1 bits (62), Expect = 6.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 465 GGXGXXGGGTGGGPXXXPPXPGG 397
GG G GGG GP PP P G
Sbjct: 13 GGAGGGGGGPPRGPPQQPPQPQG 35
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 6.8
Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Frame = -2
Query: 534 PXFXGNXXXPXG-GGXXXXPXRXAGGXGXXGGGTGGGPXXXPPXPGG 397
P G P G GG P G G G GG PP PGG
Sbjct: 394 PSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGG 440
>Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical
protein F15B9.10 protein.
Length = 373
Score = 24.2 bits (50), Expect(2) = 7.9
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2
Query: 465 GGXGXXGGGTGGG 427
GG G GGG GGG
Sbjct: 313 GGGGGGGGGMGGG 325
Score = 23.0 bits (47), Expect(2) = 7.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 501 GGGXXXXPXRXAGGXGXXGG 442
GGG P + GG G GG
Sbjct: 268 GGGYPQPPPQQGGGGGGAGG 287
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 9.0
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 465 GGXGXXGGGTGGGPXXXPPXPGGWXXXXXXKNXPXXP 355
GG G GGG G PP PGG P P
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAP 125
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 9.0
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 465 GGXGXXGGGTGGGPXXXPPXPGGWXXXXXXKNXPXXP 355
GG G GGG G PP PGG P P
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAP 125
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.7 bits (61), Expect = 9.0
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -2
Query: 522 GNXXXPXGGGXXXXPXRXAGGXGXXGGGTGGGPXXXPPXPGG 397
G P G G P G G G G GGP PGG
Sbjct: 169 GGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGG 210
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.7 bits (61), Expect = 9.0
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -2
Query: 522 GNXXXPXGGGXXXXPXRXAGGXGXXGGGTGGGPXXXPPXPGG 397
G P G G P G G G G GGP PGG
Sbjct: 449 GGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGG 490
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 9.0
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 465 GGXGXXGGGTGGGPXXXPPXPGGWXXXXXXKNXPXXP 355
GG G GGG G PP PGG P P
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAP 125
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 9.0
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 465 GGXGXXGGGTGGGPXXXPPXPGGWXXXXXXKNXPXXP 355
GG G GGG G PP PGG P P
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAP 125
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 28.7 bits (61), Expect = 9.0
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -2
Query: 507 PXGGGXXXXPXRXAGGXGXXGGGTGGGPXXXPPXPG 400
P GG P AG G G G GP P PG
Sbjct: 182 PAGGPGPAGPPGPAGADGNTPSGGGEGPAGPPGPPG 217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.148 0.493
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,325,933
Number of Sequences: 27780
Number of extensions: 192566
Number of successful extensions: 1197
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3443371140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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