Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_C09
         (1260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.036
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.063
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.15 
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    29   1.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   7.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   9.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.3 bits (75), Expect = 0.036
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +3

Query: 420 PPXGXGGXXXGAPPPPPPXKXXAPG---XXGGGXXSPPP 527
           PP G G      PPPPPP +  A G       G  +PPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
 Frame = +3

Query: 420 PPXGXGGXXXGAP--PPPPPXKXXAPGXXGGGXXSPP 524
           PP        GAP  PP PP    AP    G   +PP
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.063
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = +3

Query: 417 PPPXGXGGXXXGAPPPPPPXKXXAPGXXGGGXXSPPP 527
           P P        G PPPPPP     PG  G G   PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPP----PPGVAGAGPPPPPP 780



 Score = 33.1 bits (72), Expect = 0.083
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 416 PPPPGXXGXXFXGPPPPPP 472
           PPPP   G    GPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 32.7 bits (71), Expect = 0.11
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 416 PPPPGXXGXXFXGPPPPPP 472
           PPPPG  G     PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 30.3 bits (65), Expect = 0.59
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +3

Query: 417 PPPXGXGGXXXGAPPPPPPXKXXAPGXXGGGXXSPPP 527
           PPP        GA PPPPP    A    G    +P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +3

Query: 411 KXPPPXGXGGXXXGAPPPPPPXKXXAPGXXGGGXXSPPPXG 533
           K PPP           P P P    AP   GG    PPP G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAP-IMGGPPPPPPPPG 769


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = -1

Query: 525 GGGXPXPPPXXXGXGXFXGGGGGGPXXXXPXXPGGG 418
           GGG   PPP   G G F G GG G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 31.1 bits (67), Expect = 0.34
 Identities = 18/46 (39%), Positives = 18/46 (39%)
 Frame = -1

Query: 840 GGFXXXPPXXXGXXGXXFFFXPGXEXGGXRGGFXGGXPXFFXXPXG 703
           GG    PP   G  G   F   G   GG  GGF GG   F   P G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGG-HGGFGGGPGGFEGGPGG 239



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 20/50 (40%), Positives = 20/50 (40%)
 Frame = -1

Query: 840 GGFXXXPPXXXGXXGXXFFFXPGXEXGGXRGGFXGGXPXFFXXPXGXPPP 691
           GGF   P    G  G  F   PG   GG  GGF GG   F   P G   P
Sbjct: 224 GGFGGGPGGFEGGPGG-FGGGPGG-FGGGLGGFGGGPGGFGGGPGGHGGP 271



 Score = 27.5 bits (58), Expect = 4.1
 Identities = 23/77 (29%), Positives = 24/77 (31%)
 Frame = -1

Query: 642 GKXPXXGPFWXXGPFXXLXSXXFFXGFPPFXGXPXXPPXGGGXPXPPPXXXGXGXFXGGG 463
           G  P  G F   G F          G   F G P     G G     P   G G    GG
Sbjct: 199 GPPPGPGGFGGFGGFGG--EGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGG 256

Query: 462 GGGPXXXXPXXPGGGGF 412
           G G     P   GG G+
Sbjct: 257 GPGGFGGGPGGHGGPGW 273



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/27 (59%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 489 GXGXFXGGGGGGPXXXXPXXPGG-GGF 412
           G G F GGG GGP    P  PGG GGF
Sbjct: 189 GFGGF-GGGSGGP----PPGPGGFGGF 210


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +3

Query: 438 GXXXGAPPPPPPXKXXAPGXXGGGXXSPPPXGGXXXPXKXGG 563
           G   G   PPPP     PG   GG     P G        GG
Sbjct: 68  GITEGNAAPPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGG 109


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 417 PPPXGXGGXXXGAPPPPPP 473
           PPP   G      PPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 416 PPPPGXXGXXFXGPPPPPP 472
           PPPP   G      PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 416 PPPPGXXGXXFXGPPPPPP 472
           PPPP         PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +3

Query: 450 GAPPPPPPXKXXAPGXXGGGXXSPPPXGG 536
           G PPPPPP     PG        PPP  G
Sbjct: 7   GNPPPPPP----PPGFEPPSQPPPPPPPG 31


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
 Frame = +3

Query: 453  APPPPPPXKXXAPGXXGGGXXSP-PPXGGXXXPXKXGGXP 569
            APPPPPP      G       S  PP G         G P
Sbjct: 1881 APPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNP 1920


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
 Frame = +3

Query: 450  GAPP-PPPPXKXXAPGXXGGGXXSPPPXGGXXXPXKXGGXP 569
            G PP PPP      P    G    PPP      P    G P
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.148    0.492 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,794
Number of Sequences: 5004
Number of extensions: 27403
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)