Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_C08
         (1282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.79 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +1

Query: 373 GGG*XXXXGGGGGTXPGXRXXGXXRGXGGXG 465
           GGG     GG GG  PG    G   G GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEG 217


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/52 (28%), Positives = 16/52 (30%)
 Frame = -3

Query: 497  PPXXAXGGXXXPXPPXPRXXPXXRXPGXVPPPPPXXFXQPPPXXXFXXXVVP 342
            PP         P PP     P  +    VPP PP     P P        VP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 19/74 (25%), Positives = 21/74 (28%)
 Frame = -3

Query: 497  PPXXAXGGXXXPXPPXPRXXPXXRXPGXVPPPPPXXFXQPPPXXXFXXXVVPXXXGGVAX 318
            PP  A      P P      P    P   PP P      PP         VP    G+  
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228

Query: 317  DXVFXPTXRGXXXP 276
              V  PT +    P
Sbjct: 1229 VPV--PTAKAPPVP 1240



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 16/57 (28%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
 Frame = -3

Query: 497  PPXXAXGGXXXPXPPXPRXXPXXRXPGXVPPPPPXXFXQPP-PXXXFXXXVVPXXXG 330
            PP         P  P P   P    P  +PP P      PP P        VP   G
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
 Frame = +1

Query: 874  PPTPAGXX-TPXGGXRPXTPP----GXXNXXPPXSGKKGGGXXPPXXXPXXLPPXGRGQX 1038
            PP PA    TP     P  PP    G     PP  G  G G  PP   P  +   G    
Sbjct: 734  PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793

Query: 1039 XP 1044
             P
Sbjct: 794  AP 795



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -3

Query: 497 PPXXAXGGXXXPXPPXPRXXPXXRXPGXVPPPPP 396
           PP    GG   P PP P        P   PPPPP
Sbjct: 753 PPAPIMGG---PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -3

Query: 464 PXPPXPRXXPXXRXPGXVPPPPPXXFXQPPP 372
           P PP P        P  +P PPP      PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP 762



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
 Frame = -3

Query: 497 PPXXAXGGXXXPXP-PXPRXXPXXRXPGXVPPPPPXXFXQPPP 372
           PP         P P P P   P    P   PPPP      PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 458 PPXPRXXPXXRXPGXVPPPPPXXF 387
           PP P   P    P   PPPPP  +
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGY 32



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 476 GXXXPXPPXPRXXPXXRXPGXVPPPPP 396
           G   P PP P   P  + P   PPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPP---PPPPP 30



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 422 PGXVPPPPPXXFXQPP 375
           PG  PPPPP    +PP
Sbjct: 6   PGNPPPPPPPPGFEPP 21


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/44 (31%), Positives = 15/44 (34%)
 Frame = -3

Query: 503 RXPPXXAXGGXXXPXPPXPRXXPXXRXPGXVPPPPPXXFXQPPP 372
           R  P    G      PP P   P     G +P PP      PPP
Sbjct: 322 RGKPPIGNGSSNSSLPPPP-PPPRSNAAGSIPLPPQGRSAPPPP 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.144    0.486 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,931,070
Number of Sequences: 5004
Number of extensions: 22046
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)