Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_C07
         (1218 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    35   0.020
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    29   1.3  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    29   1.7  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    27   4.0  
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce...    27   7.0  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    26   9.2  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   9.2  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 35.1 bits (77), Expect = 0.020
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 249 NRISSENWPXFKPKPPFGQMPVLEIDGKQYAQXTAICRYLGRKYGLAGANDEE 407
           +R+     P +    P G+ P++  DG  Y +  AI  +L RKYG +    EE
Sbjct: 32  DRVDGRAPPAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEE 84


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
 Frame = +3

Query: 426 NVEFLNDIRA-SAASVHYEKDEAVKAKK--RAELEETKYPFFFEKL------NEILTKNN 578
           N E L DI + +  ++ +  DE  +AK   R    E  +P  F  L       +I+TKN 
Sbjct: 249 NSESLPDILSITLDNLSHPTDEYFEAKAYFRPSAIERNWPKIFVTLLSAWLSTQIITKNR 308

Query: 579 GHIALGKLTWGDFVYAGMYDYLKAMLQKPDL 671
             I L    W D++Y+   D+    +QKP L
Sbjct: 309 TSIRL----WIDYLYSTAVDFYTNWIQKPIL 335


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
 Frame = +3

Query: 282 KPKPPFGQMPVLEIDGKQYAQXTAICRYLGRKYGLAGANDEEAFEXDQNVEFLNDIRASA 461
           KP+ PF    V+E     Y    +        Y     N+ +A+E  Q  + ++D+ A A
Sbjct: 78  KPQWPFTGYSVVENLPSIYEGDVSPEELRWWAYQAKATNNMQAYEQRQK-QLMDDVEAKA 136

Query: 462 ASVHYEKDEAVKAKKRAELEETKYPFFFEK--LNEILTKN 575
           A+V      A    +   + +T Y   F+K   N  +T N
Sbjct: 137 AAVKRSPAAAFDEMRNKLVGKTNYKSIFDKSTSNSTVTSN 176


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -2

Query: 593 KRDMTVVLRQYLIEFLEKERVFSLLQFRPLLSFDGLVFLVVDRCGT 456
           +R + + LRQY I   E  +++  L F     F   + + +  C T
Sbjct: 416 ERALPIELRQYFIALTENAQIYEELDFEKQRLFSACIEVYLSYCNT 461


>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 363 YLGRKYGLAGANDEEAFEX--DQNVEFLNDIRASAASVHYEKDEAVKA-KKRAELEETKY 533
           YL   +G+  AN     +   D ++ F +       SVH   DEA++  KK   ++ +  
Sbjct: 25  YLTDNFGMGNANRVNLNQQVLDGSISFRDAFAKMLDSVHLSYDEALEVLKKNVAIDPSFK 84

Query: 534 PFF 542
           PF+
Sbjct: 85  PFY 87


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 615 FVYAGMYDYLKAMLQKPDLEQ 677
           FV  G+YDY+ +M  K DL+Q
Sbjct: 212 FVARGLYDYIFSMAVKLDLKQ 232


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +3

Query: 408 AFEXDQNVEFLNDIRASAASVHYEKDEAV-KAKKRAELEETKYPFFFEKLNEILTKN-NG 581
           AF  +Q ++F   +  S        D A+  A      + T YP++    + I  KN NG
Sbjct: 389 AFPPNQTLDFFRSLDESHQHYVPVLDPAIYAANPNKSADRTYYPYYSGFEDNIFIKNPNG 448

Query: 582 HIALGKLTWGDFV 620
              +G + W  FV
Sbjct: 449 SAYVG-MAWPGFV 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,799
Number of Sequences: 5004
Number of extensions: 52705
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)