Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_C07
(1218 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 36 0.064
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 34 0.26
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319 32 1.0
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 31 2.4
04_04_1367 - 32974757-32975499,32975957-32976179 30 3.2
01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205 30 3.2
03_05_0468 - 24630701-24631399 30 4.2
03_01_0249 - 1935355-1935827,1936129-1936330 30 4.2
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 29 5.6
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110 29 5.6
03_02_0555 + 9431451-9431688,9432685-9432803,9432886-9433079,943... 29 9.8
01_06_0960 - 33376012-33376433,33376566-33376731,33376848-333770... 29 9.8
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 29 9.8
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 35.9 bits (79), Expect = 0.064
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 252 RISSENWPXFKPKPPFGQMPVLEIDGKQYAQXTAICRYLGRKYGLAGAN 398
R ++ P F PFGQ+PVL+ + + AI RY+ KY GA+
Sbjct: 41 RTAAHKQPHFLALNPFGQIPVLQDGDEVLYESRAINRYIATKYKAEGAD 89
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 33.9 bits (74), Expect = 0.26
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 273 PXFKPKPPFGQMPVLEIDGKQYAQXTAICRYLGRKY--GLAGANDEEAFEXDQNVEFLND 446
P + PFG++PVLE Q AI RY+ RKY G + + E V+ D
Sbjct: 44 PEHLARNPFGEIPVLEDGDLTLYQSRAIARYIFRKYKPEFLGLGEGGSLEESAMVDVWLD 103
Query: 447 IRA 455
+ A
Sbjct: 104 VEA 106
>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
Length = 221
Score = 31.9 bits (69), Expect = 1.0
Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 18/172 (10%)
Frame = +3
Query: 273 PXFKPKPPFGQMPVLEIDGKQYAQXTAICRYLGRKYGLAG-AN----------------- 398
P + PFGQ+P + + AICRY+ RK+ AN
Sbjct: 44 PDHLARNPFGQVPAFQDGDLMLFESRAICRYILRKHRATDEANLLREGDPSESAVVDAWL 103
Query: 399 DEEAFEXDQNVEFLNDIRASAASVHYEKDEAVKAKKRAELEETKYPFFFEKLNEILTKNN 578
D EA + +V + R ++ E DE V A+ A L ET + L
Sbjct: 104 DVEALRYEPSVHAVFVQRRVVPALGGEPDERVIAESVARLRETLAVY-----EARLEATR 158
Query: 579 GHIALGKLTWGDFVYAGMYDYLKAMLQKPDLEQKYPAFRKPIEAVLAIPKVK 734
G++A G+++ D + Y M + + YP E +L P V+
Sbjct: 159 GYLAGGEVSLADLSHFPYTRYFMEMPYEVPVFGAYPRVTAWWERLLTRPSVR 210
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 30.7 bits (66), Expect = 2.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 548 ETQ*DTDEEQRSYRAWQVDLGRLCVRRHV 634
E + D D+E SY +W VD R+HV
Sbjct: 1572 EAEIDEDQEPLSYESWDVDFATTAYRQHV 1600
>04_04_1367 - 32974757-32975499,32975957-32976179
Length = 321
Score = 30.3 bits (65), Expect = 3.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2
Query: 821 FTLLTKEPI*CLNGNRFLKFCAR 753
FT+L+K+ + NGN +LK CAR
Sbjct: 281 FTMLSKDVVFDFNGNYYLKLCAR 303
>01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205
Length = 220
Score = 30.3 bits (65), Expect = 3.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 273 PXFKPKPPFGQMPVLEIDGKQYAQXTAICRYLGRKYGLAGAN 398
P + PFGQMP + + A+ RY+ RKY + AN
Sbjct: 44 PEHLKRNPFGQMPAFQDGDLLLFESRAVGRYILRKYKTSEAN 85
>03_05_0468 - 24630701-24631399
Length = 232
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 198 GARQRLLLAYGGQXFEAN--RISSENWPXFKPKPPFGQMPVLEIDGKQYAQXTAICRYLG 371
G R R+ LA G +E +++++ P GQ+PVL + GK + I ++
Sbjct: 19 GNRVRIALARKGVAYEEKPENLAAKSALLLSSNPVHGQVPVLLVGGKPVCESLVILEFID 78
Query: 372 RKYGLAG 392
++ G
Sbjct: 79 EEFAGVG 85
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 273 PXFKPKPPFGQMPVLEIDGKQYAQXTAICRYLGRKYGLAG 392
P F PFGQ+P + + AICRY+ +Y +G
Sbjct: 45 PSFLKLQPFGQVPAFKDSLTTVFESRAICRYICDQYADSG 84
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 29.5 bits (63), Expect = 5.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 432 EFLNDIRASAASVHYEKDEAVKAKKRAELEETKYP 536
E L D+R AS+HY +D+ A K + KYP
Sbjct: 714 EILEDVRVECASLHYGQDDRFGAVK--SINVVKYP 746
>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
Length = 215
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 273 PXFKPKPPFGQMPVLEIDGKQYA-QXTAICRYLGRK 377
P + PFGQ+P L+ DG + + AIC+Y+ RK
Sbjct: 44 PDHLARNPFGQVPALQ-DGDLFLWESRAICKYVCRK 78
>03_02_0555 +
9431451-9431688,9432685-9432803,9432886-9433079,
9433174-9433430,9433544-9433650,9433715-9433888,
9434359-9434490,9434776-9434955,9435062-9435265
Length = 534
Score = 28.7 bits (61), Expect = 9.8
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 495 KAKKRAELEETKYPFFFEKLNEILTKNNG 581
+A+K+AE ++ EK NEI+TK+NG
Sbjct: 278 RAQKKAERKQYLQRLHEEKRNEIITKSNG 306
>01_06_0960 -
33376012-33376433,33376566-33376731,33376848-33377033,
33377206-33377442
Length = 336
Score = 28.7 bits (61), Expect = 9.8
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 576 NGHIALGKLTWGDFVYAGMYDYLKAMLQKPDLEQKY-PAFRKPIEAVLAIPKVKAYVDAA 752
+G +G+ G F +Y+Y Q P L Y P RK V P K YVD
Sbjct: 196 SGSHTIGRAQCGSFARDRLYNYSGEGRQDPSLNTAYAPELRK--ACVAGDPFDKTYVDMD 253
Query: 753 PST 761
P +
Sbjct: 254 PGS 256
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 28.7 bits (61), Expect = 9.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 264 ENWPXFKPKPPFGQMPVLEIDGKQYAQXTAICRYLGRKY 380
+N P + PFG++P L+ + AI +Y+ RKY
Sbjct: 41 QNSPEHVERNPFGKIPALQDGDLVLFESRAIAKYILRKY 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,695,113
Number of Sequences: 37544
Number of extensions: 329843
Number of successful extensions: 928
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3736328292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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