Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_C05
         (1189 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...   104   2e-23
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...   102   1e-22
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...   101   3e-22
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    91   4e-19
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   8.9  

>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score =  104 bits (250), Expect = 2e-23
 Identities = 49/99 (49%), Positives = 64/99 (64%)
 Frame = +3

Query: 318 HEKPAYSYNALIMMAIRNSPEKRLTLNGIYEYIMTNFPYYRENRQGWQNSIRHNLSLNKC 497
           ++KP YSY+ +I  AI +S E  +TL+ IY +I T++PYYR  + GWQNSIRHNLSLNK 
Sbjct: 221 NKKPPYSYSVMIAQAILSSSECMMTLSNIYSWISTHYPYYRTTKSGWQNSIRHNLSLNKA 280

Query: 498 FVKVPRHYDDPGKGNYWMLDASADDVFIGGTTGKLRRRS 614
           F KVPR   + GKG  W +     + FI  T    R+RS
Sbjct: 281 FRKVPRKSGEQGKGMKWSIVPEFREEFIAKTRKTPRKRS 319


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score =  102 bits (244), Expect = 1e-22
 Identities = 48/105 (45%), Positives = 68/105 (64%)
 Frame = +3

Query: 267 EPVDCSKPKDDDNGEKKHEKPAYSYNALIMMAIRNSPEKRLTLNGIYEYIMTNFPYYREN 446
           EP +   P DD       +KP YSY  LI M+I  SP++RLTL+ IY++I   F +Y ++
Sbjct: 115 EPEEFFLPLDDG------KKPPYSYAMLIGMSIIRSPDRRLTLSAIYDWISNTFSFYNKS 168

Query: 447 RQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASADDVFI 581
             GWQNSIRHNLSLNK F+K+ R  + PGKG++W +    ++ F+
Sbjct: 169 NNGWQNSIRHNLSLNKAFMKIERPRNLPGKGHFWSIRPGHEEQFL 213


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score =  101 bits (241), Expect = 3e-22
 Identities = 46/95 (48%), Positives = 61/95 (64%)
 Frame = +3

Query: 300 DNGEKKHEKPAYSYNALIMMAIRNSPEKRLTLNGIYEYIMTNFPYYRENRQGWQNSIRHN 479
           D G+   +KP  SY  LI   +  +P K++TL  I E+I  N+ YYR     W NSIRHN
Sbjct: 284 DTGDAT-QKPNLSYANLIARTLIANPNKKMTLGDICEWIANNWSYYRHQPPAWHNSIRHN 342

Query: 480 LSLNKCFVKVPRHYDDPGKGNYWMLDASADDVFIG 584
           LSLNK F+++PR  ++PGKG++WMLD S  D F G
Sbjct: 343 LSLNKAFIRIPRRQNEPGKGSFWMLDPSYIDQFEG 377


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 90.6 bits (215), Expect = 4e-19
 Identities = 43/79 (54%), Positives = 52/79 (65%)
 Frame = +3

Query: 321 EKPAYSYNALIMMAIRNSPEKRLTLNGIYEYIMTNFPYYRENRQGWQNSIRHNLSLNKCF 500
           EKP  SY  LI +AI  S  K+LTL+GIY +I   F YY  +  GWQNSIRHNLSLNK F
Sbjct: 80  EKPPCSYATLIGLAILQSHNKQLTLSGIYTWIRNTFRYYLNHDGGWQNSIRHNLSLNKAF 139

Query: 501 VKVPRHYDDPGKGNYWMLD 557
           +KV +      KG+YW +D
Sbjct: 140 IKVEKPKGKTLKGHYWTID 158


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 16/58 (27%), Positives = 20/58 (34%)
 Frame = +3

Query: 789 PAFRDAVGYSALQYSPSLYDRMPTAPFLGQAXLLANTPLXQPQLXTHRXHRYTLGDLW 962
           P F  +V        PS +   P  P L     L  T +    L     H+Y L D W
Sbjct: 380 PLFELSVSMPLTLIPPSKFSE-PVKPELSSEAWLLRTEMSPLHLRLKNAHKYVLSDNW 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,197,338
Number of Sequences: 5004
Number of extensions: 56112
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)