Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_C05
         (1189 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0636 + 4627533-4628546                                           29   5.4  
08_01_0776 + 7533790-7533984,7534234-7534419,7534542-7534631,753...    29   9.5  
01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41...    29   9.5  

>06_01_0636 + 4627533-4628546
          Length = 337

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 21/50 (42%), Positives = 27/50 (54%)
 Frame = +3

Query: 765 PVAPSAVHPAFRDAVGYSALQYSPSLYDRMPTAPFLGQAXLLANTPLXQP 914
           P  P+AV P FR  VGY  LQ +P+   + P+A  L Q   +A  P  QP
Sbjct: 285 PEPPAAVSPEFRSFVGY-CLQKNPA---KRPSAAQLMQHPFVAG-PQPQP 329


>08_01_0776 +
           7533790-7533984,7534234-7534419,7534542-7534631,
           7535284-7535368,7535759-7535925,7536250-7536438,
           7537183-7537296,7537391-7537510,7537590-7537712,
           7538217-7538315,7538735-7538791,7539272-7539318,
           7539391-7539534,7540028-7540205,7540663-7540743,
           7540926-7541009,7541416-7541616
          Length = 719

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 705 VGLYSQLLYQRYAPMQMKTMPVAPSAVHPAFRDAVGYSA 821
           +G Y +L++Q Y    +K   +APSA + A +++   +A
Sbjct: 679 LGEYQKLVFQNYQTSSIKQTNIAPSAGNAALKNSASTTA 717


>01_01_0055 -
           415666-415767,416510-416602,416776-416850,416920-417071,
           417147-417267,417567-418289,418408-418489,418575-418681,
           418757-418822,418941-419057,419157-419402
          Length = 627

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = -2

Query: 924 SXAGAAPVGYLP-EGTPGPGMAPSASDHTKRVSTATRCTRQRHGMRDGQRWEPPAWS 757
           S A A P  ++P    P     PSA+   +  S A RCT           W+   W+
Sbjct: 9   SPAAARPPLHIPLRSPPSAAHLPSAAASRRASSAACRCTASASASASPSTWDWTRWT 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,917,803
Number of Sequences: 37544
Number of extensions: 438248
Number of successful extensions: 1616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3619931772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)