Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_C05
         (1189 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       77   4e-16
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   4.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   5.3  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   5.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 76.6 bits (180), Expect = 4e-16
 Identities = 34/78 (43%), Positives = 51/78 (65%)
 Frame = +3

Query: 324 KPAYSYNALIMMAIRNSPEKRLTLNGIYEYIMTNFPYYRENRQGWQNSIRHNLSLNKCFV 503
           +P ++Y +LI  +I  SP+K+LTLN IY +    F Y+R N   W+N++RHNLSL+KCF+
Sbjct: 504 RPPFTYASLIRQSIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFM 563

Query: 504 KVPRHYDDPGKGNYWMLD 557
           +V     +  KG  W +D
Sbjct: 564 RV-----ENVKGAVWTVD 576



 Score = 27.9 bits (59), Expect = 0.19
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +3

Query: 744 PMQMKTMPVAPSAVHPAFRDAVGYSALQYSPSLYD 848
           P  M TMP  PS   P  R     SAL  +  LYD
Sbjct: 436 PGSMPTMPTMPSMAGPIRRRISDKSALSLAGGLYD 470


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +3

Query: 333 YSYNALIMMAIRNSPEKRLTLNGIYEYIMTNFPYYRENRQGWQNSIRHNLSLN 491
           Y Y+ ++ +  R+  +    L+ ++EY+  ++P  R      +N  R  L+L+
Sbjct: 80  YGYDRVLSVLGRHVRDFLNGLDNLHEYLKFSYPRMRAPSFICENETRQGLTLH 132


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 885 LLANTPLXQPQLXTHRXHRYTLGDLWLLS 971
           L    P+  PQ+ + R  R  +  +W+LS
Sbjct: 165 LAVTRPVSYPQIMSPRRARLLVATVWILS 193


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 486 LNKCFVKVPRHYDDPGKGNYWMLDASADDVFIGGTTGKLRR 608
           L +C +  PR   +   G+    D   D+ F+G + G  RR
Sbjct: 4   LCECDLATPRTGTNCSSGSSSDSDGQTDEGFVGDSQGFFRR 44


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 822 LQYSPSLYDRMPTAPFLGQAXLL 890
           L  +P LYD+     FLGQ  ++
Sbjct: 10  LPLNPKLYDKHRAPKFLGQPTIV 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,740
Number of Sequences: 438
Number of extensions: 4154
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40488336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)