Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_C04
(1216 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 208 2e-52
UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11; ... 165 2e-39
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 125 2e-27
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 95 3e-18
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 78 5e-13
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 69 3e-10
UniRef50_Q51612 Cluster: Putative uncharacterized protein; n=3; ... 66 2e-09
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 64 5e-09
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 60 1e-07
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 58 5e-07
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 54 6e-06
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4... 53 1e-05
UniRef50_A4LA78 Cluster: Putative uncharacterized protein; n=1; ... 46 0.002
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 44 0.006
UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2... 42 0.032
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 36 2.1
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 36 2.8
UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4; ... 35 4.9
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur... 34 8.5
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 208 bits (509), Expect = 2e-52
Identities = 96/107 (89%), Positives = 97/107 (90%)
Frame = +3
Query: 486 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 665
SK+ T R RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61
Query: 666 CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPVQP 806
CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPP P
Sbjct: 62 CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSP 108
Score = 49.6 bits (113), Expect = 2e-04
Identities = 33/65 (50%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 676 RIPVRLSPFGKRGAFS*LTL*VSQFGVG-RSLQAGLCART-PRFSPTAAPYPVTIVLSPT 849
R+P PF R A+ L V RS T P FSPTAAPYPVTIVLSPT
Sbjct: 63 RLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSPT 122
Query: 850 R*DTT 864
R DTT
Sbjct: 123 RKDTT 127
>UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11;
cellular organisms|Rep: Uncharacterized 9.4 kDa protein -
Escherichia coli
Length = 84
Score = 165 bits (402), Expect = 2e-39
Identities = 74/81 (91%), Positives = 75/81 (92%)
Frame = +3
Query: 792 PPVQPDRCALSGNYRLESNPVRHDLSPLAAATGNRISXARYVGGATEFLKWWPNYGYTXX 971
PPVQPDRCALSGNYRLESNPVRHDLSPLAAATGNRIS ARYVGGATEFLKWWPNYGYT
Sbjct: 4 PPVQPDRCALSGNYRLESNPVRHDLSPLAAATGNRISRARYVGGATEFLKWWPNYGYTRR 63
Query: 972 TVFGICALLXPVTFGKKXGXS 1034
TVFGICALL PVTFGK+ G S
Sbjct: 64 TVFGICALLKPVTFGKRVGSS 84
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 125 bits (302), Expect = 2e-27
Identities = 72/116 (62%), Positives = 77/116 (66%)
Frame = +3
Query: 330 VCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGTVK 509
+C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 30 ICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE---I 77
Query: 510 RPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 677
RPR RFSIGSAPLTSI K DAQ+ GGETRQDYKD RRFPL APSCALLF P LP
Sbjct: 78 RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 95.1 bits (226), Expect = 3e-18
Identities = 45/54 (83%), Positives = 47/54 (87%)
Frame = +3
Query: 504 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 665
V+ PR RFSIGSAPLTSITK DAQ+ GGETRQDYKDTRRFPL APSCALLF P
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 77.8 bits (183), Expect = 5e-13
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +2
Query: 644 VRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV 754
+RSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV
Sbjct: 1 MRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV 37
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 68.5 bits (160), Expect = 3e-10
Identities = 34/64 (53%), Positives = 43/64 (67%)
Frame = -3
Query: 818 GAAVGLNRGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGSEQESARG 639
G + RGVRA+SPAWSERP P+ DT SVSYEKAPRFPKG++ + +G Q R
Sbjct: 19 GRSSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQV---SGKRQGRNRR 75
Query: 638 SFQG 627
+ +G
Sbjct: 76 AHEG 79
Score = 49.6 bits (113), Expect = 2e-04
Identities = 36/95 (37%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = -2
Query: 873 VAISRVLPGWTQDDSYRIRRSGRAEPGGSCTQPSLERTTYTELRYLQREL*ESATLPEGR 694
+A RV PGWTQDDSYR RS RAE G P+ ++ P+G+
Sbjct: 1 MAFLRVRPGWTQDDSYRKGRSSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGK 60
Query: 693 KADRYPVSG-RVGTGERTRE-LPGGNAWYLYSPVG 595
KA++ VSG R G R E G + SPVG
Sbjct: 61 KAEQ--VSGKRQGRNRRAHEGAAGEKSPASLSPVG 93
Score = 48.8 bits (111), Expect = 3e-04
Identities = 25/40 (62%), Positives = 27/40 (67%)
Frame = -1
Query: 697 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT 578
+K QVSGKRQGRNRRAHEGA+ K SL PPLT
Sbjct: 60 KKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99
>UniRef50_Q51612 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Plasmid
ColE1
Length = 96
Score = 65.7 bits (153), Expect = 2e-09
Identities = 31/39 (79%), Positives = 31/39 (79%)
Frame = -3
Query: 1037 SRXTXFFSEGNWXQQSADTKYCXXSVAVVRPPLQELCST 921
SR T FSEGNW QQSADTKYC SVAVV P LQELCST
Sbjct: 28 SRATNSFSEGNWLQQSADTKYCPSSVAVVGPLLQELCST 66
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 64.5 bits (150), Expect = 5e-09
Identities = 30/38 (78%), Positives = 30/38 (78%)
Frame = -3
Query: 494 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 381
P LLTCSF YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 60.1 bits (139), Expect = 1e-07
Identities = 42/89 (47%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = +1
Query: 607 IKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGAFS*LTL*VSQFGVG---RSLQAG 777
+KI VS LP ALSCS+PA RIPV PF G+ + S G+ RS
Sbjct: 32 LKIITVSDESLPLALSCSNPAVSRIPV--PPFSLAGSVA--LSHSSHSGISARCRSFAPS 87
Query: 778 LC-ARTPRFSPTAAPYPVTIVLSPTR*DT 861
++ P FSPTAAPYPVT+ LSPTR T
Sbjct: 88 WAVSKNPPFSPTAAPYPVTVHLSPTRKST 116
Score = 59.7 bits (138), Expect = 2e-07
Identities = 34/76 (44%), Positives = 36/76 (47%)
Frame = +3
Query: 579 VRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCR 758
VR GETRQD K P P PPFSL + + GIS RCR
Sbjct: 23 VRSGETRQDLKIITVSDESLPLALSCSNPAVSRIPVPPFSLAGSVALSHSSHSGISARCR 82
Query: 759 SFAPSWAVCTNPPVQP 806
SFAPSWAV NPP P
Sbjct: 83 SFAPSWAVSKNPPFSP 98
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 58.0 bits (134), Expect = 5e-07
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +3
Query: 393 CGERYQLTQRR*YG--YPQNQGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITK 566
C R Q R G +P+N I +R + + + P T F S PLT+ITK
Sbjct: 22 CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81
Query: 567 IDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 665
I Q + +T+ +YK T FPL++PS +LLF P
Sbjct: 82 IYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 54.4 bits (125), Expect = 6e-06
Identities = 31/57 (54%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 294 CINXSANARGXAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 461
CI A AR AV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
Bacteria|Rep: Putative uncharacterized protein 1 -
Escherichia coli
Length = 42
Score = 53.2 bits (122), Expect = 1e-05
Identities = 26/40 (65%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = -2
Query: 873 VAISRVLPGWTQDDSYRIRRSGRAEPGGSCTQPS-LERTT 757
+A+ R LPGWTQDDSYRIRRSGRAE G P+ ER T
Sbjct: 1 MALRRALPGWTQDDSYRIRRSGRAERGVRAHSPAWSERPT 40
Score = 43.2 bits (97), Expect = 0.014
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -3
Query: 797 RGVRAHSPAWSERPTPN 747
RGVRAHSPAWSERPTPN
Sbjct: 26 RGVRAHSPAWSERPTPN 42
>UniRef50_A4LA78 Cluster: Putative uncharacterized protein; n=1;
Edwardsiella tarda|Rep: Putative uncharacterized protein
- Edwardsiella tarda
Length = 99
Score = 46.0 bits (104), Expect = 0.002
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +1
Query: 769 QAGLCARTPRFSPTAAPYPVTIVLSPTR*DTTYRHWQ 879
QAG C +P FSPT P VT++L+PT DT RHW+
Sbjct: 64 QAGFCTNSP-FSPTITPVQVTVLLNPTLTDTQKRHWR 99
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 44.4 bits (100), Expect = 0.006
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 413 HSKAVIRLSTESGDNAGKNM 472
HSKAVIRLSTESGDNAGKNM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2;
cellular organisms|Rep: Putative uncharacterized protein
1 - Escherichia coli
Length = 47
Score = 41.9 bits (94), Expect = 0.032
Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -2
Query: 873 VAISRVLPGWTQDDSYRIRRSGRAEPGGSCTQPS-LERTT 757
+A R PGWTQ +SYRIRRS RAE G P+ ER T
Sbjct: 1 MAFYRAFPGWTQVNSYRIRRSSRAERGVLAYSPAWSERPT 40
Score = 38.7 bits (86), Expect = 0.30
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = -3
Query: 797 RGVRAHSPAWSERPTPN*DT 738
RGV A+SPAWSERPTP+ DT
Sbjct: 26 RGVLAYSPAWSERPTPSRDT 45
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 35.9 bits (79), Expect = 2.1
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = -1
Query: 364 ERGSGRAPNTQTAXPRALADXLMQ 293
+R + APNTQTA PRALAD LMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 35.5 bits (78), Expect = 2.8
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 292 SALMXRPTRGEXRFAYW 342
+ALM RPTRGE RFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (strain 668)
Length = 755
Score = 34.7 bits (76), Expect = 4.9
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = -1
Query: 724 MRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 620
+R+R A RR GG+ G+R+GRNR+ + RG+R
Sbjct: 355 VRRRAAPRRRHGGEWRGRRRGRNRKRRQ--QRGQR 387
>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
precursor; n=2; Polaromonas|Rep: Putative
uncharacterized protein precursor - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 268
Score = 33.9 bits (74), Expect = 8.5
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -3
Query: 503 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 381
G W +G L L++ LI+W+ LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 916,198,720
Number of Sequences: 1657284
Number of extensions: 18641169
Number of successful extensions: 51868
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 48887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51816
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 122791400986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -