Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_C02
(1170 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 66 9e-12
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 47 6e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 5e-04
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 40 7e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 38 0.003
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.008
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 36 0.011
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 34 0.033
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.058
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 32 0.13
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.13
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 31 0.23
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 31 0.41
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 29 1.6
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 29 1.6
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 27 3.8
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 27 6.6
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 66.1 bits (154), Expect = 9e-12
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Frame = +1
Query: 478 MSRLIVKNLPNKVTVD----HLRELFGQKGEVTDVQLKYTKDGKFRNFGFVGYRTEEQAI 645
MSR+I+KN+P + +L+ L E+TDV + TK+G R F F+G++ EE A
Sbjct: 1 MSRIIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDAD 60
Query: 646 AAKEYFDGTCIRSMKIEVQTCVDL-GDEKKPRAWSKYASDSTAYKKIHKDE 795
A Y + + + + +IEV +D +K R +SKYAS + K K++
Sbjct: 61 KAIRYLNKSYVETSRIEVHRALDYRSANEKLRPYSKYASKNIELKLQKKEK 111
Score = 37.5 bits (83), Expect = 0.004
Identities = 22/97 (22%), Positives = 43/97 (44%)
Frame = +1
Query: 481 SRLIVKNLPNKVTVDHLRELFGQKGEVTDVQLKYTKDGKFRNFGFVGYRTEEQAIAAKEY 660
+++++KNLP + T ++ L G G++ V++ D R F F + T +A A
Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRA 780
Query: 661 FDGTCIRSMKIEVQTCVDLGDEKKPRAWSKYASDSTA 771
T + + +Q + + A K A ++ A
Sbjct: 781 LKNTHLLGRHLVLQYASNATMDDMQHAIEKMAKEANA 817
Score = 30.3 bits (65), Expect = 0.54
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 484 RLIVKNLPNKVTVDHLRELFGQKGEVTDVQLKY-TKDGKFRNFGFVGYRTEEQAIAA 651
RL ++NL D L+ LFG G++ V + K + F ++ + + A+ A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRA 380
Score = 27.1 bits (57), Expect = 5.0
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Frame = +1
Query: 487 LIVKNLPNKVTVDHLRELF----GQKGEVTDVQLKYTKDGKFRN--FGFVGYRTEEQAIA 648
+ VKNL + +++F G V + + GK+ + FGFV ++ + A+A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 649 AKEYFDGTCIRSMKIEVQ 702
A +G + K+E++
Sbjct: 681 AMHAMNGFVLDGHKLEIK 698
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 46.8 bits (106), Expect = 6e-06
Identities = 24/73 (32%), Positives = 38/73 (52%)
Frame = +1
Query: 481 SRLIVKNLPNKVTVDHLRELFGQKGEVTDVQLKYTKDGKFRNFGFVGYRTEEQAIAAKEY 660
+ + +KNL ++T +LFGQ GE+T + L ++ K R FGFV Y E A A +
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 661 FDGTCIRSMKIEV 699
+ + K+ V
Sbjct: 321 LNDKEYKGKKLYV 333
Score = 41.5 bits (93), Expect = 2e-04
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +1
Query: 487 LIVKNLPNKVTVDHLRELFGQKGEVTDVQLKYTKDGKFRNFGFVGYRTEEQA 642
L +KNL ++V + L+ F G +T ++ + GK + FGFV Y T E+A
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEA 417
Score = 35.5 bits (78), Expect = 0.014
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +1
Query: 487 LIVKNLPNKVTVDHLRELFGQKGEVTDVQLKYTKDGKFRNFGFVGYRTEEQAIAAKEYFD 666
+ +KNL + L + F G++ ++ + G + +GFV + + E A AA E+ +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 667 GTCIRSMKIEV 699
G + K+ V
Sbjct: 230 GMLLNDKKVYV 240
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 40.3 bits (90), Expect = 5e-04
Identities = 26/105 (24%), Positives = 47/105 (44%)
Frame = +1
Query: 484 RLIVKNLPNKVTVDHLRELFGQKGEVTDVQLKYTKDGKFRNFGFVGYRTEEQAIAAKEYF 663
RL V NL N V + L + F + + ++ ++GK R FGFV ++ +Q + A
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 664 DGTCIRSMKIEVQTCVDLGDEKKPRAWSKYASDSTAYKKIHKDEI 798
+G I S +++ + KP ++ DS ++ I
Sbjct: 91 NGKYIGSRPVKLSRAT---SDVKPNEVNEKTIDSKIRNSLYSRTI 132
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 39.9 bits (89), Expect = 7e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +1
Query: 481 SRLIVKNLPNKVTVDHLRELFGQK-GEVTDVQLKYTKDGKFRNFGFVGYRTEEQAIAAKE 657
S++IV NLP VT ++ELF + G V L Y +G+ + + + A A E
Sbjct: 55 SKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRAYE 114
Query: 658 YFDGTCI---RSMKIEV 699
++G + R MK+E+
Sbjct: 115 QYEGRLVDGTRKMKVEI 131
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 37.9 bits (84), Expect = 0.003
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 487 LIVKNLPNKVTVDHLRELFGQKGEVTDVQLKYTKD-GKFRNFGFVGYRTEEQAIAAKEYF 663
L V NL + + LR+LF + G + V L K+ G+ + F FV Y + AI A++
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 664 DG 669
DG
Sbjct: 264 DG 265
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.3 bits (80), Expect = 0.008
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 484 RLIVKNLPNKVTV-DHLRELFGQKGEVTDVQLKYTKDGKFRNFGFVGYRTEEQAIAAKEY 660
RLI++NLP + HL F + G+V ++++ G+ F FV + + A A
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 661 FDGTCIRSMKIEVQTCV 711
+GT I I V V
Sbjct: 168 LNGTEIDGRPIAVDWAV 184
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 35.9 bits (79), Expect = 0.011
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +1
Query: 481 SRLIVKNLPNKVTVDHLRELFGQKGEVTDVQLKYTKDGKFRNFGFVGYRTEEQAIAAKEY 660
S L +KNL K+T + + +LFG+ G V ++L T + R FV Y + A A E
Sbjct: 12 SILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTV--QTRGTAFVVYENVQDARRACEK 69
Query: 661 FDG 669
G
Sbjct: 70 LSG 72
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 34.3 bits (75), Expect = 0.033
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 487 LIVKNLPNKVTVDHLRELFGQKGEVTDVQLKYTKDGKFRNFGFVGYRTEEQAIAAKEYFD 666
+ V NLP + +L +LF G V ++ Y G+ + FG V + E A ++ E +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 667 G 669
G
Sbjct: 342 G 342
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.5 bits (73), Expect = 0.058
Identities = 22/82 (26%), Positives = 40/82 (48%)
Frame = +1
Query: 484 RLIVKNLPNKVTVDHLRELFGQKGEVTDVQLKYTKDGKFRNFGFVGYRTEEQAIAAKEYF 663
RL V N+ +T + ++ +F G++ V L+ + + FG++ YR A A E
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 664 DGTCIRSMKIEVQTCVDLGDEK 729
+G + + V C LG++K
Sbjct: 401 NGFDLAGRNMRV--C--LGNDK 418
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 32.3 bits (70), Expect = 0.13
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 487 LIVKNLPNKVTVDHLRELFGQKGEVTDVQLKYTKD-GKFRNFGFVGYRTEEQAIAAKEYF 663
++VKN+P + D L + F Q G Y D G FR F + E+A +
Sbjct: 204 IVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTL 263
Query: 664 DGTCIRSMKIEVQ 702
+G I ++ V+
Sbjct: 264 NGYEINGRRLRVE 276
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 32.3 bits (70), Expect = 0.13
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +1
Query: 487 LIVKNLPNKVTVDHLRELFGQKGEVTDVQLKYTK-DGKFRNFGFVGYRTEEQAIAAKEY- 660
L V NLP +V+ L+ F + G+V V++ K G+ + + FV + + + +K
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 661 FDGTCIRSMKIEVQTCVDLGDEKKPR 738
F T + KI ++ G + + R
Sbjct: 154 FHHTIYKERKINIELTAGGGGKTEAR 179
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 31.5 bits (68), Expect = 0.23
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 487 LIVKNLPNKVTVDHLRELFGQKGEVTDVQLK-YTKDGKFRNFGFVGYRTEEQAIAA 651
++V+NL VT +H+ E+FG G + + + Y K + + ++ Y +QA A
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANA 156
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 30.7 bits (66), Expect = 0.41
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 472 RRMSRLIVK-NLPNKVTVDHLRELFGQKGEVTDVQLKYTKDGKFRNFGFVGYRTEEQA 642
R RL+ K NLP + V+H R L G + +++ QL++ K F + V + ++A
Sbjct: 17 RDNERLLKKENLPANIRVEHERALLGLQEQLSMAQLEHKKQKIFERYKKVRFFERKKA 74
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 28.7 bits (61), Expect = 1.6
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Frame = +1
Query: 493 VKNLPNKVTVDHLRELFGQKGEVTD--------VQLKYTKDGKFRNFGFVGYRTEEQAIA 648
++ LP VTVD + E+F + G + +++ T+DG + + + E
Sbjct: 114 IQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIYRTEDGTPKGDALIVFFRSESVEL 173
Query: 649 AKEYFDGTCIR---SMKIEVQTC-VDLGDEK 729
A++ FD T R K+ VQ +D EK
Sbjct: 174 AEQLFDDTEFRYGSGQKMRVQKANIDYKKEK 204
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 487 LIVKNLPNKVTVDHLRELFGQKGEVTDVQLKYTKD-GKFRNFGFVGYRTEEQAIAAKEYF 663
+ V N+P V+ + E+F Q G V +L + G + +GF + E A
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 664 DGTCIRSMKIEVQ 702
+ + + KI V+
Sbjct: 69 NNSELGPRKIRVE 81
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 27.5 bits (58), Expect = 3.8
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +1
Query: 487 LIVKNLPNKVTVDHLRE----LFGQKGEVTDVQLKYTKDGKFRNFGFVGYRTEEQAIAAK 654
L ++N+ K+ + L+ LFG G+V DVQ + T + R FV + E A A
Sbjct: 28 LYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTL--RMRGQAFVVFDNLENASRAL 85
Query: 655 EYFDG 669
+ G
Sbjct: 86 KDLQG 90
>SPBC19G7.13 |trf1||telomeric DNA binding factor
Trf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 506 LTRLQSIILENCLVRKERLPTYS 574
LT ++ I+E C RKERL +S
Sbjct: 267 LTYVEKQIIEKCTARKERLANFS 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,748,965
Number of Sequences: 5004
Number of extensions: 69366
Number of successful extensions: 181
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 627537330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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