Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_C01
(1204 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 438 e-123
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 437 e-123
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 5.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 6.9
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 26 9.1
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 438 bits (1078), Expect = e-123
Identities = 210/314 (66%), Positives = 245/314 (78%)
Frame = +1
Query: 187 ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQDGFLVVNGNKIAVFSERD 366
A + K QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++DG LV++GN I V +ERD
Sbjct: 22 ALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKDGKLVIDGNAIDVHNERD 81
Query: 367 PKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAYD 546
P I W +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAPS DAPM+VVGVN E ++
Sbjct: 82 PADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSKDAPMYVVGVNEEKFN 141
Query: 547 PSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXXDGPSGKLWRDGRG 726
PS KVISNASCTTNCLAPLAKVI+D F I EGLM DGPS K WR GRG
Sbjct: 142 PSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRG 201
Query: 727 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQK 906
A NIIP+STGAAKAVGKVIPALNGKLTGMAFRVP +VSVVDLTV+L KP +YE IK
Sbjct: 202 ASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAA 261
Query: 907 VKEAAEGPLKGILGYTEXQVVSSDFIGDSHSSIFDAAAGISLNDNFVXLIXWYENEYGYX 1086
+K A+EGP+KG+LGYTE VVS+DF GD+HSSIFDA+AGI L+ FV L+ WY+NE+GY
Sbjct: 262 IKAASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYS 321
Query: 1087 XXXXXLIXYIQXKN 1128
L+ Y K+
Sbjct: 322 RRVVDLVAYTAAKD 335
Score = 35.1 bits (77), Expect = 0.020
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 138 KIGINGFGRIGRLVLR 185
K+GINGFGRIGR+VLR
Sbjct: 5 KVGINGFGRIGRIVLR 20
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 437 bits (1077), Expect = e-123
Identities = 209/307 (68%), Positives = 242/307 (78%)
Frame = +1
Query: 208 QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQDGFLVVNGNKIAVFSERDPKAIPWG 387
QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE + G LV++G+ I V +ERDP I W
Sbjct: 29 QVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKGGKLVIDGHSIDVHNERDPANIKWS 88
Query: 388 KAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAYDPSFKVIS 567
+GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAPS DAPMFVVGVNLE ++PS KVIS
Sbjct: 89 ASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSKDAPMFVVGVNLEKFNPSEKVIS 148
Query: 568 NASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXXDGPSGKLWRDGRGAQQNIIP 747
NASCTTNCLAPLAKVI+D F I EGLM DGPS K WR GRGA NIIP
Sbjct: 149 NASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIP 208
Query: 748 ASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEG 927
+STGAAKAVGKVIPALNGKLTGMAFRVP +VSVVDLTV+L KP +YE IK +K A+EG
Sbjct: 209 SSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEG 268
Query: 928 PLKGILGYTEXQVVSSDFIGDSHSSIFDAAAGISLNDNFVXLIXWYENEYGYXXXXXXLI 1107
P+KG+LGYTE VVS+DF GD+HSSIFDA+AGI L+ FV L+ WY+NE+GY L+
Sbjct: 269 PMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLV 328
Query: 1108 XYIQXKN 1128
Y K+
Sbjct: 329 AYTASKD 335
Score = 35.1 bits (77), Expect = 0.020
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 138 KIGINGFGRIGRLVLR 185
K+GINGFGRIGR+VLR
Sbjct: 5 KVGINGFGRIGRIVLR 20
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 945 ENALQRTFSCLLDLLLDGF 889
EN++Q T C+LD +LD F
Sbjct: 185 ENSIQTTIDCVLDFVLDVF 203
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 115 SXLPRTCQKLESMDLAALAVWCSXASIEKGAQVVAINDPFIGLD 246
S LP LES ++ S EKG Q+ ++D I LD
Sbjct: 1157 SWLPNLTLNLESKSTTLRTIYYSKDFDEKGNQITVLDDLNISLD 1200
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 9.1
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 504 ISTGS*YNNFFSTSLQVSRCFICSGKDTSRLYNIFSPSFSPRNGLRVPF*E-NSNFVTIN 328
+ +G +N +S + C +C G + ++ +P F R +R+P N N TI
Sbjct: 153 VCSGQGFNPKYSADKAIESCPVCGGSGFRVIEHMIAPGF--RQQMRMPCNACNGNGRTIK 210
Query: 327 NK 322
+K
Sbjct: 211 HK 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,384,680
Number of Sequences: 5004
Number of extensions: 90707
Number of successful extensions: 243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 649451332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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