Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_C01
         (1204 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             413   e-115
SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)            31   2.4  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.2  
SB_502| Best HMM Match : DNA_pol3_alpha (HMM E-Value=0)                29   5.6  
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.8  
SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.8  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.8  
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)                 29   9.8  
SB_44418| Best HMM Match : TP2 (HMM E-Value=4.3)                       29   9.8  
SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.8  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  413 bits (1017), Expect = e-115
 Identities = 199/293 (67%), Positives = 229/293 (78%), Gaps = 1/293 (0%)
 Frame = +1

Query: 253  VYLFKYDSTHGRFKGSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFT 432
            VY+FKYDSTHGRFKG+VE +DG LV+NG  ++VF+ +DP  IPWG+ GA+YVVESTGVFT
Sbjct: 817  VYMFKYDSTHGRFKGTVEAKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFT 876

Query: 433  TTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKV 612
            T +KA  HL+GGAKKVIISAPSADAPMFV+GVN E YDPS  V+SNASCTTNCLAPL KV
Sbjct: 877  TLEKAGFHLKGGAKKVIISAPSADAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVKV 936

Query: 613  IHDNFEIVEGLMXXXXXXXXXXXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPA 792
            I+DNF + EGLM             DGPS K WRDGRGA QN+IPASTGAAKAVGKVIP 
Sbjct: 937  INDNFGLEEGLMTTIHAYTATQKTVDGPSAKNWRDGRGAHQNVIPASTGAAKAVGKVIPE 996

Query: 793  LNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKG-ILGYTEXQVV 969
            +NGKLTGMAFRVPVA+VSVVDLT RL KPA YE IK  VK+A+E    G  LGYTE QVV
Sbjct: 997  VNGKLTGMAFRVPVADVSVVDLTCRLKKPAKYEEIKAVVKKASESKEMGQYLGYTEDQVV 1056

Query: 970  SSDFIGDSHSSIFDAAAGISLNDNFVXLIXWYENEYGYXXXXXXLIXYIQXKN 1128
            S+DFIG+  SS+FDA AGI LND FV L+ WY+NEYGY      L+ Y+  ++
Sbjct: 1057 STDFIGERVSSVFDARAGIQLNDKFVKLVTWYDNEYGYSHRVVDLMRYMASRS 1109


>SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)
          Length = 277

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 491 LPVLMPPCLLWVLT*KLMTPLLRSSQMLL 577
           +PV+MP CL  +   K+M PLL  +++LL
Sbjct: 194 IPVIMPHCLAAMSCGKVMAPLLAKAELLL 222


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
 Frame = +2

Query: 281 MAVLRAVLRFRMDSLLLMVTKL-LFSQKGTLRPFRGEKLGLNML*SLLVSLPLQIKHLLT 457
           +A L+ V+  ++ + L ++T L + +    L P +     L +L  L V +PLQ+   LT
Sbjct: 380 LAPLQVVITLQVLTSLQVLTSLQVLTSLQVLTPLQ-VPTPLQVLIPLQVLIPLQV---LT 435

Query: 458 WREVLKKLLYQLP--VLMPPCLLWVLT*KLMTPLLRSSQMLLAPQTVLPHLQRLFMI 622
             +VL  L   LP  VL+P  +L  L   +   +L   Q+L  PQ + P LQ L ++
Sbjct: 436 PLQVLIPLQVLLPLQVLIPLQVLTPLQVLITLQVLTPPQVLTPPQVLAP-LQVLILL 491


>SB_502| Best HMM Match : DNA_pol3_alpha (HMM E-Value=0)
          Length = 428

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = +1

Query: 718 GRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAI 897
           GR A   II   T AAKAV + +  + GK  G+A +  ++ +   ++ + L K    E  
Sbjct: 139 GRDAVSQIITFGTMAAKAVVRDVARVQGKAFGLADK--LSKLIPFEVGITLSKAMEQEPA 196

Query: 898 KQKVKEAAE 924
            ++  E++E
Sbjct: 197 LREFVESSE 205


>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 727 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVS 846
           AQ N I    G    +G  I  +NG + GMA    +AN+S
Sbjct: 374 AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLS 413


>SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
 Frame = +2

Query: 413 SLLVSLPLQIKHLLTWREVLKKLLYQLPVLMPPCLLWVLT*KLMTPLLRSSQMLLAPQTV 592
           +LLV L  +   +L  + + + LL  +  L+   LL VL   LM  LLR + ++L  + +
Sbjct: 104 ALLVKLLRRALLVLINKLLRRALLVLINKLLRRALL-VLMNVLMNKLLRGALLVLMNKLL 162

Query: 593 LPHLQRLFMITXXXXXXXXXXFMPQLLHRKLLMDLLENY-GVMAVVLNKTSFLPLLVLPK 769
               + L ++            M +LL R LL+ + +   G + V++NK     LLVL  
Sbjct: 163 R---RALLVLMNKLLRGALLVLMNKLLRRALLVLMNKLLRGALLVLMNKLLRRALLVLMN 219

Query: 770 LWVRLSLLLM 799
             +R +LL++
Sbjct: 220 KLLRRALLVL 229


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 31/97 (31%), Positives = 42/97 (43%)
 Frame = -3

Query: 1037 SFKEIPAAASKIEECESPMKSEDTT*XSVYPRMPFKGPSAASLTFCLMAS*LAGFPRRTV 858
            S +  P+AAS  +   S   S  T   SV P     GPSAAS +    +      P+ TV
Sbjct: 1939 STQAAPSAASSTQVAPSMAPSTQTG-HSVTPSTQ-AGPSAASCSQVAQSIVATAPPKPTV 1996

Query: 857  RSTTDTLATGTRNAIPVSLPLRAGITLPTALAAPVEA 747
             STT    + T    P     +  I+L  A ++PV A
Sbjct: 1997 ASTTYQAPSTTTTTHPSQ---QTTISLVQAQSSPVAA 2030


>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
          Length = 405

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 488 DIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLSE 354
           D+I  +A P + A A S    T V S +Y+  AFP G    S S+
Sbjct: 175 DVIERMAAPPRDAPATSTPCPTRVLSPSYALAAFPTGENASSSSQ 219


>SB_44418| Best HMM Match : TP2 (HMM E-Value=4.3)
          Length = 148

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = -2

Query: 804 LAIKSRDNLTHSFGSTSRGRNDVL-LSTTAITP*FSRRS---INSFLCSSCGMNSSHQAL 637
           LA K+  N  HSF    + R   + +ST  +T  F  R    +N+ LC  C     H+AL
Sbjct: 27  LATKAAKN--HSFKKIYKIRRSFIDVSTLGLTSGFESRGSRYVNARLCKLCWQQRGHRAL 84

Query: 636 NNFKVIMNNL 607
              K I   L
Sbjct: 85  FRGKAIQGLL 94


>SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 727 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVS 846
           AQ N I    G    +G  I  +NG + GMA    +AN+S
Sbjct: 63  AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLS 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,847,877
Number of Sequences: 59808
Number of extensions: 679712
Number of successful extensions: 1343
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3728036860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)