Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_B23
         (1194 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.32 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.1  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   9.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.32
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +2

Query: 833 PPETPPXPPXXXXXXXXXXPPPLXPPGXXGGXXXKT 940
           PP  PP PP          PPP  PPG       KT
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKT 40



 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -1

Query: 555 IPPXXTPXPXXXXXFFXXXKNPPPPPXXLXNXREXVVVAPS 433
           +PP   P P     F    + PPPPP      R+    A S
Sbjct: 4   LPPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQS 44


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 859 RGXRGGFRGGXXXFXXPRGGS 797
           RG RGGF GG   F   RGG+
Sbjct: 15  RGGRGGFNGGRGGFGGGRGGA 35



 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -3

Query: 859 RGXRGGFRGGXXXFXXPRGG 800
           RG RGG RGG   F   RGG
Sbjct: 8   RGGRGGSRGGRGGFNGGRGG 27



 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = -3

Query: 910 GGGXGGXXXXXXXXXXX-RGXRGGFRGGXXXFXXPRGGS 797
           GGG GG            RG RGG RGG       RGG+
Sbjct: 29  GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGA 67



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -3

Query: 940 GFXXXPPXXPGGGXGGXXXXXXXXXXXRGXRGGFRGG 830
           GF        GGG GG           RG RGG  GG
Sbjct: 27  GFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 24/81 (29%), Positives = 24/81 (29%), Gaps = 9/81 (11%)
 Frame = -3

Query: 1015 GGGXXXXPPXXGGXPPPPXXKXXXXGFXXXPPXX---------PGGGXGGXXXXXXXXXX 863
            GGG        GG PP P       GF                PGG  GG          
Sbjct: 187  GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 862  XRGXRGGFRGGXXXFXXPRGG 800
              G  GGF GG   F    GG
Sbjct: 247  FGGGLGGFGGGPGGFGGGPGG 267



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/54 (33%), Positives = 18/54 (33%)
 Frame = -2

Query: 983 GGGXPPPXXEXXXXGFXKXPPXXXRGGXGGXXFXXXXXXXXKGXPGGFPGGXXG 822
           GG   PP       GF         GG GG            G PGGF GG  G
Sbjct: 195 GGSGGPPPGPGGFGGF---------GGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = -1

Query: 996 PPPXWGGXPPPXXGKXXXXVXKXXPPXXPGGXRGGG 889
           P P  GG PPP             PP  P     GG
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 907 GGXGGXXXXXXXXXXXRGXRGGFRGG 830
           GG GG            G RGGFRGG
Sbjct: 160 GGFGGGSRGGFGGGSRGGSRGGFRGG 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,450
Number of Sequences: 5004
Number of extensions: 29648
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 643474786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)