Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_B21
         (1202 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    65   2e-11
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    27   5.2  

>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
 Frame = +1

Query: 628  RREVFGSNLIPPKPPKTFLTLVWEALQDVTLIILEVAAVVSLGLSFYKPADDPNDAAHL- 804
            R + +G N++P    K  + L+ EA +D  LI+L +AAVVSL L  Y+    P     + 
Sbjct: 208  RVKYYGKNVLPEHDSKGLIRLMLEAFKDKVLILLSIAAVVSLALGLYQTFGQPPTLDPIT 267

Query: 805  DEEEGHYQWIEGLAXXXXXXXXXXXTAFNDYTKERQFXGLQSRIKGEHKFAVIRGTEVKQ 984
             + E   +W+EG+A              ND+ KE QF  L +++       V+R   V  
Sbjct: 268  GKPEPRVEWVEGVAIMAAIVIVVTVGGVNDWQKELQFKKLNAKV-SNFDVQVLRDGAVHS 326

Query: 985  VPIXXIVXGXIFQIXYG 1035
              +  +V G +  +  G
Sbjct: 327  TSVFDLVVGDVLFVEAG 343


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -1

Query: 155 PTSTDAGATILSDTLRKKKEVLRQVHTSTVHL 60
           P + D  ATILS  LR  K+VL  + TST  L
Sbjct: 270 PLTGDNPATILSLPLRPGKDVLLSLGTSTTAL 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,735,937
Number of Sequences: 5004
Number of extensions: 66479
Number of successful extensions: 176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 649451332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)