Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_B21
         (1202 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   1.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   5.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   5.3  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    23   7.1  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      23   7.1  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +1

Query: 601 SGSKADLQHRREVFGSNLIPPKPPKT--FLTLVWEALQ 708
           +G++ DL+H ++  GSNL+      +  +L++ W+ L+
Sbjct: 182 NGAQVDLKHMKQEAGSNLVAKGIDLSDFYLSVEWDILE 219


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 604 GSKADLQHRREVFGSNLIP--PKPPKTFLTLVWEALQ 708
           G K DL+H  E  GSN++       + ++++ W+ L+
Sbjct: 178 GFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWDILE 214


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 604 GSKADLQHRREVFGSNLIP--PKPPKTFLTLVWEALQ 708
           G K DL+H  E  GSN++       + ++++ W+ L+
Sbjct: 178 GFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWDILE 214


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 557 KNYARNSTHLPQTVL 601
           KNY++N+THL   +L
Sbjct: 2   KNYSKNATHLITVLL 16


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 557 KNYARNSTHLPQTVL 601
           KNY++N+THL   +L
Sbjct: 2   KNYSKNATHLITVLL 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 262,396
Number of Sequences: 438
Number of extensions: 5171
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41090841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)