Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_B20
(1198 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.12c |||ubiquitin family protein, unknown|Schizosaccharom... 38 0.004
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 33 0.059
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 32 0.14
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 32 0.14
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 32 0.14
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 32 0.14
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 32 0.14
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 30 0.73
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 28 3.0
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 27 3.9
SPAC23C4.09c |||DNA-binding TFAR19-related protein|Schizosacchar... 27 5.2
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 5.2
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 27 5.2
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 27 6.8
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 26 9.0
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 9.0
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 9.0
>SPBC800.12c |||ubiquitin family protein,
unknown|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 37.5 bits (83), Expect = 0.004
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 82 ITLTVKTPKAXQQVEIEEXADIKSLKEVLSSKFSTEPEQLCLIFAGK 222
+ TV+ P EI + I LKEVL+S+ ST+P + L++ GK
Sbjct: 61 VAKTVRPPIQQASTEINVQSTILELKEVLASQLSTQPSSIRLMYKGK 107
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 33.5 bits (73), Expect = 0.059
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 82 ITLTVKTPKAXQQ-VEIEEXADIKSLKEVLSSKFSTEPEQLCLIFAGKIMNDADTL 246
I+LT+K + V ++ + + +LKE ++ E E+ LI+AG+++ D ++L
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESL 59
Score = 33.5 bits (73), Expect = 0.059
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 10/66 (15%)
Frame = +2
Query: 479 LRQVLDNPLVQ----QMMNDPENMRSLITSNPQMQDL------MSRNPEISHMLNNPELL 628
L +L NP+VQ +M ++P+ + +I S+P +++ M ++PE + +P+ +
Sbjct: 144 LANMLSNPMVQSSINEMFSNPQMLDMIINSSPHLRNAPPYVRQMMQSPEFRRAMTDPDTM 203
Query: 629 RQTMEL 646
RQ +L
Sbjct: 204 RQMAQL 209
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 521 NDPENMRSLITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELMRS 685
N P S+ NP+ + E+++ML+NP + E+ NP ML ++ S
Sbjct: 120 NIPMPSASMFGPNPE-NPVPPSTEELANMLSNPMVQSSINEMFSNPQMLDMIINS 173
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 121 VEIEEXADIKSLKEVLSSKFSTEPEQLCLIFAGKIMNDADTL 246
+E+E I ++K + K P+Q LIFAGK + D TL
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 121 VEIEEXADIKSLKEVLSSKFSTEPEQLCLIFAGKIMNDADTL 246
+E+E I ++K + K P+Q LIFAGK + D TL
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 121 VEIEEXADIKSLKEVLSSKFSTEPEQLCLIFAGKIMNDADTL 246
+E+E I ++K + K P+Q LIFAGK + D TL
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 121 VEIEEXADIKSLKEVLSSKFSTEPEQLCLIFAGKIMNDADTL 246
+E+E I ++K + K P+Q LIFAGK + D TL
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 121 VEIEEXADIKSLKEVLSSKFSTEPEQLCLIFAGKIMNDADTL 246
+E+E I ++K + K P+Q LIFAGK + D TL
Sbjct: 91 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 121 VEIEEXADIKSLKEVLSSKFSTEPEQLCLIFAGKIMNDADTL 246
+E+E I ++K + K P+Q LIFAGK + D TL
Sbjct: 167 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 121 VEIEEXADIKSLKEVLSSKFSTEPEQLCLIFAGKIMNDADTL 246
+E+E I ++K + K P+Q LIFAGK + D TL
Sbjct: 243 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 121 VEIEEXADIKSLKEVLSSKFSTEPEQLCLIFAGKIMNDADTL 246
+E+E I ++K + K P+Q LIFAGK + D TL
Sbjct: 319 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 121 VEIEEXADIKSLKEVLSSKFSTEPEQLCLIFAGKIMNDADTL 246
+E+E I ++K + K P+Q LIFAGK + D TL
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 29.9 bits (64), Expect = 0.73
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +2
Query: 506 VQQMMNDPE---NMRSLITSNPQMQDLMSRNPEISHMLNNPELLRQTME 643
++ +++ PE N++ L+ N + + S NP++ L PE+L Q ++
Sbjct: 17 IEAILDKPEDEINLKELLEENGVLDECKSHNPKLLEYLCKPEVLSQLID 65
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 479 LRQVLDNPLVQQMMNDPENMRSLITSNPQMQ 571
LR ++D+P + ++N+PE +++LI P+ Q
Sbjct: 1169 LRSIVDSPRKKIIVNNPEILQALIKLTPRNQ 1199
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 88 LTVKTPKAXQ-QVEIEEXADIKSLKEVLSSKFSTEPEQLCLIFAGKIMND 234
+ VKT + +++I+ + +KE + K P Q LI+AGK M D
Sbjct: 3 IKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMAD 52
>SPAC23C4.09c |||DNA-binding TFAR19-related
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 131
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/64 (23%), Positives = 33/64 (51%)
Frame = +2
Query: 437 QARMQQELLSNPDMLRQVLDNPLVQQMMNDPENMRSLITSNPQMQDLMSRNPEISHMLNN 616
Q +Q E+ N +L Q+L++P ++ + + ++ M++ +ISH ++
Sbjct: 37 QQEVQDEMRQN--LLSQILEHPARDRLRRIALVRKDRAEAVEELLLRMAKTGQISHKISE 94
Query: 617 PELL 628
PEL+
Sbjct: 95 PELI 98
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 27.1 bits (57), Expect = 5.2
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +2
Query: 494 DNPLVQQMMNDPENMRSLITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQE 673
D+PL + ++R + +PQ+ D +R +S L++ L AR P
Sbjct: 244 DSPLYYRRATIASDLRPSVYQHPQLYDF-NRPESLSGQLDDESL-------ARMPYSPNA 295
Query: 674 LMRSHDRALSNLESIPGGY 730
+ R++ ++ ESIP GY
Sbjct: 296 VSRNYAMNMTLPESIPEGY 314
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/31 (35%), Positives = 23/31 (74%)
Frame = +2
Query: 455 ELLSNPDMLRQVLDNPLVQQMMNDPENMRSL 547
+LL + L++ D+ L+QQ+++DPE +++L
Sbjct: 654 DLLYSHLSLKEGQDDSLIQQIISDPETVKTL 684
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 26.6 bits (56), Expect = 6.8
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +1
Query: 82 ITLTVKTPKAXQQVEIEEXADIK--SLKEVLSSKFSTEPEQLCLIFAGKIMNDADTL 246
+ LT K + + V + AD K LKE + ++ + E E+ LI++G+I+ D T+
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTV 57
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 966 LINTPGMQSLLQQMSENPRLVXSMLSXPXTXSMLQ 1070
++ P MQ++L Q ENP + + P S ++
Sbjct: 546 ILQDPAMQAILGQARENPAALMEHMKNPTVKSKIE 580
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 9.0
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Frame = +2
Query: 440 ARMQQELLSNPDMLRQVLDNPLVQQMM---------NDPE----NMRSLITSNPQMQDLM 580
++ Q+LLS + +R+ L+N QQ + ND E + L + N +QD++
Sbjct: 667 SKRNQDLLSEMEAIRKELENSKYQQQLSTDRLTNANNDVEAFKKEAKELRSINQNLQDII 726
Query: 581 SRN--------PEISHMLNNPELLRQTMELARNPAMLQELMRSHDRALSNLESIPGGYNA 736
SR E+ H+ + E L+ + ++ L++ R+ +R +S + +
Sbjct: 727 SRQDQRASKFAEELLHVNSLAERLKGELNASKGEKDLRK--RTQERLISENDKLLAERER 784
Query: 737 LQRMYRDIQ 763
L + D+Q
Sbjct: 785 LMSLVSDLQ 793
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 9.0
Identities = 26/141 (18%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Frame = +2
Query: 428 MDLQARMQQELLSNPDMLRQVLDNPLVQQMMNDPENMRSLITSNPQMQD-LMSRNPEISH 604
+ L+ + +L N D+ + + L+Q ++ + E +++L TSN D ++ P +
Sbjct: 1464 LKLKEATKSGILDNKDLSKF---SELIQSLLKENEELKNLTTSNLGSDDKMLDFAPLLED 1520
Query: 605 MLNNP-ELLRQTME--LARNPAMLQELMRSHDRALSNLESIPGGYNALQRMYRDIQEPML 775
+ NN ++ +E ++ A+ + S ++ S +++ R+ +Q P +
Sbjct: 1521 VPNNTRNQIKGFVEKAISSKRAIAKLYSASEEKLFSTEKALREITKERDRLLHGLQGPSV 1580
Query: 776 NVASSMAGNPFSGLVDNSDGT 838
+ A ++ N DG+
Sbjct: 1581 PTSPLKAPTASQLIIPNFDGS 1601
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,045,841
Number of Sequences: 5004
Number of extensions: 78169
Number of successful extensions: 238
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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