Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_B18
         (1266 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...   111   2e-25
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    33   0.063
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    30   0.59 
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa...    29   1.4  

>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score =  111 bits (267), Expect = 2e-25
 Identities = 65/170 (38%), Positives = 95/170 (55%), Gaps = 1/170 (0%)
 Frame = +2

Query: 320 LEXTVSPDRNELEAAVRYLDHAATTNXTTCIKMLSDVLLQGGNSQVARMAAGLQLKNHLT 499
           L  T+SPD N    A + L++AA T+    + +L+  L    +    RMAAGL LKN +T
Sbjct: 7   LAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLALKNAIT 66

Query: 500 SKDPTLKQQYQQRWLALAEDVRLXIKENILAAIG-TENSRPSLAAQCVAYVAVAELPVGQ 676
           +++   K +YQQ W +L  +++  +K   L  +G +E+     AAQ VA +A  EL   Q
Sbjct: 67  AREEARKLEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAYELATNQ 126

Query: 677 WNDLIPILVENVVHVQSXELKKEAXLEAIGYICXDIDAEXLTXRSNRILT 826
           W DL+  LV NV   Q   LK+ + L+ IGYIC  +  E L+ +SN ILT
Sbjct: 127 WPDLMVTLVANVGEGQPSALKQHS-LQTIGYICESVSPEVLSAQSNAILT 175


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 33.5 bits (73), Expect = 0.063
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
 Frame = +2

Query: 284 MHAETXLTLIXILEXTVSPDRNELEAAVRYLDHAATTNXTTCIKMLSDVLLQGGNSQVAR 463
           M A+  L L  +L  +++PD  ++  A R L+        + + +   ++    N QV +
Sbjct: 1   MDAQFTLELTQLLFQSIAPDTTQITEATRALETKYLKEPGSLLSLFH-IMGTCENPQVRQ 59

Query: 464 MAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLXIKENILAAIGTENSRPSLAA--QC 637
           +AA ++ +         L  +Y   W ++  DV+  I+ N+L     E       A  + 
Sbjct: 60  LAA-IEARK--------LCHKY---WSSVDADVQNQIRSNLLDITLKEPESIVRHAFGRV 107

Query: 638 VAYVAVAELPVGQWNDLIPILVE 706
           +A +A  +LP G+WN+L   LV+
Sbjct: 108 IAALAKLDLPEGKWNELSAFLVQ 130


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 365 VRYLDHAATTNXTTCIKMLSDVLLQGGNSQVARMAAGLQLKNHLTSKDPTLK 520
           ++Y++  A    T  +  +   LL GG+  +A++   +  K HL S D TL+
Sbjct: 191 LKYVESLAVALRTESVTWVRYFLLMGGHIVLAKILQAIHEKKHLKSPDITLE 242


>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +2

Query: 476 LQLKNHLTSKDP--TLKQQYQQRWLALAEDVRLXIKENILAAIGTENSRPSLAAQCVAYV 649
           LQ+K    ++ P  TL+ ++   W  +  D    +++ +          P    +C+ Y+
Sbjct: 25  LQIKEQYDAEQPLITLQTKFNLAWALVRSDSTQHVQQGLSLFCSIYKDSPERRLECLYYI 84

Query: 650 AVAELPVGQWND 685
           A++   + Q+ +
Sbjct: 85  ALSHYKLKQYEE 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,341,622
Number of Sequences: 5004
Number of extensions: 50025
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 687563588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)