Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_B18
(1266 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0820 + 23437811-23440230,23440336-23440534 83 6e-16
05_03_0648 + 16563147-16565557,16565655-16565850 81 2e-15
03_02_0662 - 10250235-10250433,10250692-10253105 80 4e-15
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 31 1.5
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852... 31 1.5
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 30 4.4
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 82.6 bits (195), Expect = 6e-16
Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 2/177 (1%)
Frame = +2
Query: 302 LTLIXILEXTVSPDRNELEAAVRYLDHAATTNXTTCIKMLSDVLLQGGNSQVARMAAGLQ 481
L + +L SPD + A L N + LS+ L + +R AGL
Sbjct: 3 LDITQVLLSAQSPDGATRKLAEESLKQFQEQNLPGFLFSLSNELANEEKPEESRRLAGLI 62
Query: 482 LKNHLTSKDPTLKQQYQQRWLALAEDVRLXIKENILAAIGTE-NSRPSLAAQCVAYVAVA 658
LKN L +K+ K + QRWLAL V+ IK +L + + S S ++Q +A VA
Sbjct: 63 LKNALDAKEQHRKNELFQRWLALDVGVKAQIKGFLLQTLSSPVASARSTSSQVIAKVAGI 122
Query: 659 ELPVGQWNDLIPILVENVVHVQSXELKKEAXLEAIGYICXDIDAEXL-TXRSNRILT 826
E+P QW +LI L+ N+ VQ K+A LE +GY+C ++ E + + N+ILT
Sbjct: 123 EIPQKQWPELIASLLSNIHQVQPN--VKQATLETLGYLCEEVSPEAVDQDQVNKILT 177
>05_03_0648 + 16563147-16565557,16565655-16565850
Length = 868
Score = 81.0 bits (191), Expect = 2e-15
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 2/177 (1%)
Frame = +2
Query: 302 LTLIXILEXTVSPDRNELEAAVRYLDHAATTNXTTCIKMLSDVLLQGGNSQVARMAAGLQ 481
+ + IL S D N A L N + LS L +R AG+
Sbjct: 1 MNITQILLSAQSADGNLRVVAEGNLKQFQEQNLPNFLLSLSVELSDNEKPPESRRLAGII 60
Query: 482 LKNHLTSKDPTLKQQYQQRWLALAEDVRLXIKENILAAIGTE-NSRPSLAAQCVAYVAVA 658
LKN L +KD K+ Q+W++L ++ IKE++L +G+ + ++Q +A VA
Sbjct: 61 LKNSLDAKDSAKKELLIQQWVSLDPSIKQKIKESLLITLGSSVHDARHTSSQVIAKVASI 120
Query: 659 ELPVGQWNDLIPILVENVVHVQSXELKKEAXLEAIGYICXDIDAEXL-TXRSNRILT 826
E+P +W +LI L+ N+ + K+A LEA+GY+C +I E L + N +LT
Sbjct: 121 EIPRREWQELIAKLLGNMTQQGAPAPLKQATLEALGYVCEEISPEHLEQDQVNAVLT 177
>03_02_0662 - 10250235-10250433,10250692-10253105
Length = 870
Score = 79.8 bits (188), Expect = 4e-15
Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 3/142 (2%)
Frame = +2
Query: 410 IKMLSDVLLQGGNSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLXIKENIL 589
++ LS L N +R AG+ LKN L +K+ T K+++ QRW+ + ++ +KE++L
Sbjct: 37 LQTLSVELSNDENPPESRRLAGILLKNSLDAKESTRKEEFVQRWMNVDPAIKSQVKESLL 96
Query: 590 AAIGTE--NSRPSLAAQCVAYVAVAELPVGQWNDLIPILVENVVHVQSXELKKEAXLEAI 763
+G+ +R S ++Q +A VA E+P W +LI L+ N+ + K+A L+ +
Sbjct: 97 ITLGSPVFEARRS-SSQVIAKVAAIEIPHQGWPELIVNLLTNMTKPDAPPCLKQATLDCL 155
Query: 764 GYICXDIDAEXL-TXRSNRILT 826
GY+C +I E L + N +LT
Sbjct: 156 GYVCEEISPEDLEQDQVNAVLT 177
>04_04_1693 +
35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 31.5 bits (68), Expect = 1.5
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Frame = +2
Query: 443 GNSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLXIKENILAAIGTENSRPS 622
G S AR AAGL LKN+L + ++ QQ +K +L IG N
Sbjct: 61 GKSFEARQAAGLLLKNNLRATFSSMPPASQQ-----------YVKSELLPCIGATNKAIR 109
Query: 623 LAAQCVAYVAVAELPVGQWNDLIPILVENVVHVQSXEL-KKEAXLEAIGYICXDIDAE 793
V V + V W +L L + + S +L E ++AI IC D+ E
Sbjct: 110 STVGTVISVLFQIVRVAGWIELFQALHQ---CLDSNDLDHMEGAMDAIYKICEDVPEE 164
>03_02_0441 -
8517501-8517701,8518004-8518139,8519995-8520107,
8520189-8520284,8520376-8520590,8520675-8520797,
8520887-8520917,8521020-8521079,8521951-8522106,
8522185-8522274,8522347-8522562,8522671-8522805,
8522898-8523401,8523485-8523700,8524411-8524456,
8524542-8524678,8525059-8525191,8526084-8526358
Length = 960
Score = 31.5 bits (68), Expect = 1.5
Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +2
Query: 515 LKQQYQQRWLALAEDVRLXIKENILAAIGTENSR--PSLAAQCVAYVAVAELPVGQWNDL 688
L+++ W L + +K+ ++ +I ++S +A V+ +A +P G+W +L
Sbjct: 60 LRKKITSHWPKLPPHAKASLKQALIDSITIDHSHLVRRASANVVSIIAKYAVPAGEWPEL 119
Query: 689 IPILVE 706
+P + +
Sbjct: 120 LPFIFQ 125
>01_06_1801 - 39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 29.9 bits (64), Expect = 4.4
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Frame = +2
Query: 458 ARMAAGLQLKNHLTSKDPTLKQQ-----YQQRWLALAEDVRLXIKENILAAIGTENSRPS 622
A++ G Q + LT+KD +++ + +++ A+ D + K+N LAA G++N PS
Sbjct: 1267 AKIVPGNQSADPLTAKDQSVRAKSIEGRHERSEAAMKPDAQQ--KKNALAANGSDNQMPS 1324
Query: 623 LAAQ 634
+AQ
Sbjct: 1325 SSAQ 1328
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,927,383
Number of Sequences: 37544
Number of extensions: 347910
Number of successful extensions: 717
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3922562724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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