Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_B18
         (1266 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta...   149   5e-36
Z83120-2|CAB05586.1|  883|Caenorhabditis elegans Hypothetical pr...    38   0.020

>AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta
           family protein 1 protein.
          Length = 896

 Score =  149 bits (360), Expect = 5e-36
 Identities = 75/173 (43%), Positives = 106/173 (61%)
 Frame = +2

Query: 308 LIXILEXTVSPDRNELEAAVRYLDHAATTNXTTCIKMLSDVLLQGGNSQVARMAAGLQLK 487
           ++ +LE TVS ++N+ + A+ Y+  A   +    ++ LS +L         R AAGLQLK
Sbjct: 9   MLTVLEKTVSQNQNDQKQAMDYIAAACQQDFPVFVQCLSMILRTQQCQSFVRQAAGLQLK 68

Query: 488 NHLTSKDPTLKQQYQQRWLALAEDVRLXIKENILAAIGTENSRPSLAAQCVAYVAVAELP 667
           N L +K+   K  Y QRWL L  +VR  +K+N+   +GTE SRPS+AAQCVA +A AELP
Sbjct: 69  NVLCAKETETKNVYLQRWLQLTAEVREQVKQNVTGTLGTEPSRPSIAAQCVAAIACAELP 128

Query: 668 VGQWNDLIPILVENVVHVQSXELKKEAXLEAIGYICXDIDAEXLTXRSNRILT 826
              W ++I +L  NV   QS E+ KE+ LE +GYIC DID   L  ++N +LT
Sbjct: 129 QNLWPNVINLLKSNVTESQSGEMLKESSLETLGYICQDIDPRVLETKANDVLT 181


>Z83120-2|CAB05586.1|  883|Caenorhabditis elegans Hypothetical
           protein R06A4.4a protein.
          Length = 883

 Score = 37.5 bits (83), Expect = 0.020
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 8/156 (5%)
 Frame = +2

Query: 338 PDRNELEAAVRYLDHAATTNXTTCIKMLSDVLLQGGNSQ-----VARMAAGLQLKNHLTS 502
           PD++ELE  ++ L HA +T+     + +   L+Q    Q     +  + + ++     TS
Sbjct: 5   PDQHELEQVIQLLQHAHSTDRDVQ-RNVQVQLVQLNEHQKFCCYLVYILSDMKEMIDATS 63

Query: 503 KDPT---LKQQYQQRWLALAEDVRLXIKENILAAIGTENSRPSLAAQCVAYVAVAELPVG 673
           +      LK   + +W    +DV+  ++   L +IG +          +    V E  + 
Sbjct: 64  RSLAGLLLKNNIRAKWNKYPQDVKFFVRTTCLKSIGDQEPLIRATVGIIVTTIVMEENMC 123

Query: 674 QWNDLIPILVENVVHVQSXELKKEAXLEAIGYICXD 781
            W DL+  L    V +Q  EL +E  L A+  +  D
Sbjct: 124 DWPDLLDTLA--TVLMQPDELMQEGALGALQKVFED 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,045,846
Number of Sequences: 27780
Number of extensions: 298886
Number of successful extensions: 618
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3526846804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)