Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_B17
         (1299 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like ...    31   1.3  
AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like ...    31   1.3  
AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical ...    30   3.1  
AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical ...    29   5.4  

>AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform b protein.
          Length = 453

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +1

Query: 460 PGGGGGXXSXXXXXXXXRGXGXXXXGPPXLPPXXXPXPXXXGXXXXYXXPPGG 618
           P  GGG            G G      P LPP   P P   G    Y  P GG
Sbjct: 33  PSCGGGAPPCSSSSYATGGGGGSYAAAPALPPPPPPPPAPIGGGAGYAAPFGG 85


>AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform a protein.
          Length = 393

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +1

Query: 460 PGGGGGXXSXXXXXXXXRGXGXXXXGPPXLPPXXXPXPXXXGXXXXYXXPPGG 618
           P  GGG            G G      P LPP   P P   G    Y  P GG
Sbjct: 33  PSCGGGAPPCSSSSYATGGGGGSYAAAPALPPPPPPPPAPIGGGAGYAAPFGG 85


>AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical
           protein ZK973.9 protein.
          Length = 233

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/54 (33%), Positives = 19/54 (35%)
 Frame = +1

Query: 538 PPXLPPXXXPXPXXXGXXXXYXXPPGGDTRSPXXXGXXPXKXXPKXRPXHGAXP 699
           PP  PP   P P   G    Y  PP G    P   G  P     +  P  GA P
Sbjct: 178 PPVYPPFGQPAPQMSGQRMPYPYPPQGMPGYP--GGPPPPPHGYEGYPPPGAQP 229


>AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical
           protein Y75B8A.8 protein.
          Length = 715

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 584 PXXXGXGXLXGGXXGGPXNXXPXPRGGGV 498
           P   G G   GG   GP    P P+GGGV
Sbjct: 10  PMYGGAGGGGGGPPRGPPQQPPQPQGGGV 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,388,144
Number of Sequences: 27780
Number of extensions: 151096
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3621523944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)