Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_B16
         (1234 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.081
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.25 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.43 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.43 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.76 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.081
 Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
 Frame = -2

Query: 738 KXPXPPPXXXXXPXXXPXXKXXFXXXPPPXGXXXPPPP--XXXKXPPPPP 595
           K P PPP     P   P         P   G   PPPP       PPPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 30.7 bits (66), Expect = 0.43
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -3

Query: 1007 PPPPXXXXPPPPXXKXPXXXXKXXPPPPP 921
            PPP      PPP    P       PPPPP
Sbjct: 752  PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 30.7 bits (66), Expect = 0.43
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -2

Query: 1008 PPPPXXXXPPPPXXKXPXXXXXKXPPPPP 922
            PP P    PPPP            PPPPP
Sbjct: 753  PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = -2

Query: 732 PXPPPXXXXXPXXXPXXKXXFXXXPPPXGXXXPPPPXXXKXPPPPP 595
           P P P     P   P         PPP      PPP     PPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP----PPPPPP 783



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 332 PPPPKXXXXFXXPXPPPPKXXPPPP 258
           PPPP          PPPP   PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPP--PPPPP 783



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -2

Query: 1008 PPPPXXXXPPPPXXKXPXXXXXKXPPPPP 922
            P P     PPPP            PPPPP
Sbjct: 754  PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -2

Query: 1008 PPPPXXXXPPPPXXKXPXXXXXKXPPPP 925
            PPPP    PPPP            PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 30.7 bits (66), Expect = 0.43
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -3

Query: 1007 PPPPXXXXPPPPXXKXPXXXXKXXPPPPP 921
            PPPP    PPP     P       PPP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -3

Query: 1004 PPPXXXXPPPPXXKXPXXXXKXXPPPPP 921
            PPP     PPP    P        PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 660  PPPXGXXXPPPPXXXKXPPPPP 595
            PPP     PPPP     P  PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPP 1728


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 332 PPPPKXXXXFXXPXPPPPKXXPPPP 258
           PPPP     F  P  PPP   PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPP---PPPP 30



 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 1007 PPPPXXXXPPPPXXKXPXXXXKXXPPPPP 921
            PPPP    PPPP  + P    +  PPPPP
Sbjct: 9    PPPP----PPPPGFEPP---SQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
 Frame = -2

Query: 657 PPXGXXXPPPPXXXKXP--PPPP 595
           PP     PPPP   + P  PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 332 PPPPKXXXXFXXPXPPPPKXXPPPP 258
           PPPP+       P PP  +  PPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
 Frame = -3

Query: 704 PPXXPXXKKXFFXXPPPLXGKXXPPPPXXKKXP-----PPP 597
           PP  P         P P  G+  PPPP  +  P     PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 18/58 (31%), Positives = 18/58 (31%), Gaps = 9/58 (15%)
 Frame = -2

Query: 741 KKXPXPPPXXXXXPXXXPXX-----KXXFXXXPPPX----GXXXPPPPXXXKXPPPPP 595
           KK P PPP         P              PPP         P PP     PPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
 Frame = +1

Query: 601 GGGXFXXXGGGGXXXPXRGGGXXKXXFXXXG-XXGGXXXXGGGXGXF 738
           GGG     GG G   P  GG      F   G   GG    GGG G F
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF 233



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 19/50 (38%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
 Frame = +1

Query: 598 GGGGXFXXXGGGGXXXPXRGG-GXXKXXFXXX--GXXGGXXXXGGGXGXF 738
           GG G F   GG G      GG G     F     G  GG    GGG G F
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = +1

Query: 598 GGGGXFXXXGGGGXXXPXR-GGGXXKXXFXXXGXXGGXXXXGGGXG 732
           GG G F    GG    P   GGG         G  GG    GGG G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 18/51 (35%), Positives = 18/51 (35%)
 Frame = -3

Query: 749 PXXKKXPXPPPXXXXPPXXPXXKKXFFXXPPPLXGKXXPPPPXXKKXPPPP 597
           P   K P P P    PP  P          P L     P PP   K PPPP
Sbjct: 159 PIPSKAP-PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP---KVPPPP 205


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 19/75 (25%), Positives = 20/75 (26%), Gaps = 5/75 (6%)
 Frame = -1

Query: 805  PPPPXXXXXXXXXXXXXGAPXKKXPXXPPPXXXXPXXXPXX-----KKXFXXXPPPXXXK 641
            PP P              AP  + P  P P    P   P       K      P P    
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSV 1109

Query: 640  XXPPPPGXKXXPPPP 596
              PP P     PP P
Sbjct: 1110 AVPPVPAPSGAPPVP 1124



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 18/69 (26%), Positives = 18/69 (26%)
 Frame = -1

Query: 805  PPPPXXXXXXXXXXXXXGAPXKKXPXXPPPXXXXPXXXPXXKKXFXXXPPPXXXKXXPPP 626
            PP P             GAP    P    P    P   P   K     PP       PP 
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161

Query: 625  PGXKXXPPP 599
            P      PP
Sbjct: 1162 PKPSVAAPP 1170



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 17/69 (24%), Positives = 17/69 (24%)
 Frame = -1

Query: 805  PPPPXXXXXXXXXXXXXGAPXKKXPXXPPPXXXXPXXXPXXKKXFXXXPPPXXXKXXPPP 626
            PP P              AP    P    P    P   P   K     PP       PP 
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142

Query: 625  PGXKXXPPP 599
            P      PP
Sbjct: 1143 PKPSVAAPP 1151



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 18/69 (26%), Positives = 18/69 (26%)
 Frame = -1

Query: 805  PPPPXXXXXXXXXXXXXGAPXKKXPXXPPPXXXXPXXXPXXKKXFXXXPPPXXXKXXPPP 626
            PP P             GAP    P   PP        P   K     PP       PP 
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPV 1123

Query: 625  PGXKXXPPP 599
            P      PP
Sbjct: 1124 PKPSVAAPP 1132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.157    0.534 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,375
Number of Sequences: 5004
Number of extensions: 33923
Number of successful extensions: 329
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)