Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_B15
         (1200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    33   0.10 
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    28   3.0  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    26   9.0  

>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +2

Query: 788 GDIPAGTFGAIDALNHNVYECYISPYVTASRV*IPDVVMASLKYLHYHY 934
           G +PAG+ G +D  +H  +   +SPY++A ++ + +  + + + L Y Y
Sbjct: 271 GALPAGSEGYVDGFDHTAWRYLMSPYISAYKLGLSEPYI-NFESLFYWY 318


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 650 QDLLPEDLCLPENLYHYITSIG-NTTTVNGEEIKFNL--PDAAIPQAADGDIPAG 805
           +DL PE+L L +NL   I   G +    +G  +K +   P+ A P+  +G + AG
Sbjct: 155 RDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAG 209


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +2

Query: 173 RNDRRAYEFQQRQ----ALRDDWNQVRDFEQREQKPRGPTQRSTNWRKQ 307
           R+ RR  + Q+R       RD + + R+   RE+ PR P +   NW+ +
Sbjct: 44  RSSRRYEDSQRRDYSPARRRDRYERHRE-SVREESPRRPVEHERNWQPE 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,028,174
Number of Sequences: 5004
Number of extensions: 78656
Number of successful extensions: 183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)