Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_B15
(1200 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0122 + 1267048-1267149,1267764-1267855,1268137-1268234,126... 33 0.34
05_05_0044 - 21819193-21819418,21819531-21820759 31 1.8
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 31 1.8
04_01_0142 + 1640472-1640611,1641618-1641744,1642233-1642425,164... 30 3.1
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 29 5.5
09_02_0553 - 10565450-10565529,10565652-10565792,10565793-10566219 29 7.3
06_03_0068 - 16177937-16178746 29 7.3
04_01_0121 + 1253201-1253584 29 7.3
>04_01_0122 +
1267048-1267149,1267764-1267855,1268137-1268234,
1268333-1268488,1268736-1269355,1269480-1269547,
1269848-1270099,1270390-1270525,1271054-1271246,
1271386-1271939
Length = 756
Score = 33.5 bits (73), Expect = 0.34
Identities = 21/76 (27%), Positives = 28/76 (36%)
Frame = +2
Query: 635 DSARCQDLLPEDLCLPENLYHYITSIGNTTTVNGEEIKFNLPDAAIPQAADGDIPAGTFG 814
D D+ P D N + S N TT G I NLP AIP + T
Sbjct: 610 DPGLIYDINPLDYLKFFNCMGGLGSQDNCTTTKGSVIDLNLPSIAIPNLRTSETAVRTVT 669
Query: 815 AIDALNHNVYECYISP 862
+ VY+ ++ P
Sbjct: 670 NVGVQQEVVYKAFLDP 685
>05_05_0044 - 21819193-21819418,21819531-21820759
Length = 484
Score = 31.1 bits (67), Expect = 1.8
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 345 MPLLLTILERRRKRPQLMNRSTTWD 419
MPL L +L+R++++ QL+ R T WD
Sbjct: 112 MPLSLRMLKRKKQQQQLVARQTRWD 136
>05_01_0356 +
2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -2
Query: 272 REVSVLFVQSHELGSSRHGELVSAGT--RRHGDRSCCLASHHQRDCHAVVVDLFQ 114
+E S++F Q+ G G+ + A R+ + CC+ASH + + +DL Q
Sbjct: 624 KEFSLIFSQAPNRGGKAPGDSLDAQRWWNRYVEAQCCIASHDYKGGLDIYLDLMQ 678
>04_01_0142 +
1640472-1640611,1641618-1641744,1642233-1642425,
1642793-1643349
Length = 338
Score = 30.3 bits (65), Expect = 3.1
Identities = 26/98 (26%), Positives = 34/98 (34%)
Frame = +2
Query: 617 NGERKMDSARCQDLLPEDLCLPENLYHYITSIGNTTTVNGEEIKFNLPDAAIPQAADGDI 796
N D D+ P D N + S N TTV G NLP AIP
Sbjct: 186 NPNMAADPGLIYDIEPSDYFKFFNCMGGLGSGDNCTTVKGSLADLNLPSIAIPNPRTFQA 245
Query: 797 PAGTFGAIDALNHNVYECYISPYVTASRV*IPDVVMAS 910
T + N VY+ ++ P P V++ S
Sbjct: 246 TMRTVTNVGQAN-AVYKAFLQPPTGVEMTVNPSVLVFS 282
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 133 LWLT-SSKALGLGIIICHPGCN 71
LWL +S ++G G IICH GC+
Sbjct: 336 LWLVQNSNSIGQGYIICHLGCH 357
>09_02_0553 - 10565450-10565529,10565652-10565792,10565793-10566219
Length = 215
Score = 29.1 bits (62), Expect = 7.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 593 YIIDLTLDNGERKMDSARCQDLLPEDLCLPENLYHYITSIGN 718
++IDL ++ + SAR ++LL ++ C E +H IGN
Sbjct: 80 HLIDL-VETKDNSPSSARLEELLRKENCRKETAFHDAVCIGN 120
>06_03_0068 - 16177937-16178746
Length = 269
Score = 29.1 bits (62), Expect = 7.3
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 371 AKEETAPIDEPLYDLGPHTSSIPVQETYSQNFEFGGYIDQVE 496
A EE PID PL DL PH + P + + +ID +E
Sbjct: 188 ADEEGLPIDIPLPDLEPHHNPPPEEPKEGWTYNVLIHIDTLE 229
>04_01_0121 + 1253201-1253584
Length = 127
Score = 29.1 bits (62), Expect = 7.3
Identities = 24/92 (26%), Positives = 34/92 (36%)
Frame = +2
Query: 635 DSARCQDLLPEDLCLPENLYHYITSIGNTTTVNGEEIKFNLPDAAIPQAADGDIPAGTFG 814
D D+ P D N + S N TTV NLP AIP +
Sbjct: 4 DPGLIYDIEPSDYFKFFNCMGGLGSRDNCTTVKESIADLNLPSIAIPNLRTFQAMTRSVT 63
Query: 815 AIDALNHNVYECYISPYVTASRV*IPDVVMAS 910
+D +N VY+ ++ P P V++ S
Sbjct: 64 NVDQVN-AVYKAFLQPPTGVEMAVDPSVLVFS 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,687,897
Number of Sequences: 37544
Number of extensions: 536288
Number of successful extensions: 1345
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3666490380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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