Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_B14
         (1278 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...   163   4e-41
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    73   1e-13
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    46   1e-05
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    26   9.7  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    26   9.7  

>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score =  163 bits (397), Expect = 4e-41
 Identities = 78/107 (72%), Positives = 90/107 (84%)
 Frame = +1

Query: 289 ILNLVQQAXNYKQLRKGAXXATKXLNRGLSELIIMAADAEPLEIVLHIPILCEXKNVPYV 468
           IL+LVQQA +YKQLRKGA  ATK LNRG+SE I+MAAD EP+EI+LH+P+LCE KNVPYV
Sbjct: 19  ILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYV 78

Query: 469 FVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIERLLV 609
           FV SK ALGRACGVSRP+IS SIT NE S L PQIQ I+  IE+LL+
Sbjct: 79  FVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKLLI 125


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 31/90 (34%), Positives = 52/90 (57%)
 Frame = +1

Query: 289 ILNLVQQAXNYKQLRKGAXXATKXLNRGLSELIIMAADAEPLEIVLHIPILCEXKNVPYV 468
           ++  V++A   K + +G     K + +G   L+I+A D  P++++ HIP+LCE  NVPY+
Sbjct: 41  MMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYL 100

Query: 469 FVRSKQALGRACGVSRPIISCSITINEGSQ 558
           +  SK+ LG A    RP  SC + +  G +
Sbjct: 101 YTVSKELLGEASNTKRP-TSCVMIVPGGKK 129


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 16/40 (40%), Positives = 30/40 (75%)
 Frame = +1

Query: 376 SELIIMAADAEPLEIVLHIPILCEXKNVPYVFVRSKQALG 495
           ++L+++A+D +P+E+V+ +P LC+   VPY  V++K  LG
Sbjct: 148 AKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 403 AEPLEIVLHIPILCEXKNVPYVFV 474
           A+ L+ V H P  CE KN   VF+
Sbjct: 253 AKRLDYVFHSPSTCEAKNAKVVFL 276


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 549 LIDGYRARYDGSGNTASTTECLLRPNKHIWHIL 451
           +I GY+ R D SG   ST    L  N+   HIL
Sbjct: 263 VIKGYKGRVDRSGLDCSTLLASLYSNEFDMHIL 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,160
Number of Sequences: 5004
Number of extensions: 34714
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)