Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_B14
(1278 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 165 5e-41
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 153 4e-37
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 71 3e-12
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 70 3e-12
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 50 5e-06
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 49 7e-06
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 33 0.48
04_04_0172 + 23290421-23290519,23291564-23291677,23291783-232918... 30 4.5
07_03_1411 + 26379556-26379620,26379883-26379940,26380057-263802... 29 5.9
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 165 bits (402), Expect = 5e-41
Identities = 76/107 (71%), Positives = 92/107 (85%)
Frame = +1
Query: 289 ILNLVQQAXNYKQLRKGAXXATKXLNRGLSELIIMAADAEPLEIVLHIPILCEXKNVPYV 468
IL+LVQQA NYKQL+KGA ATK LNRG+SE ++MAAD EPLEI+LH+P+L E KNVPYV
Sbjct: 22 ILDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYV 81
Query: 469 FVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIERLLV 609
FV SKQALGRACGV+RP+I+CS+T NEGSQLK IQ ++ IE+LL+
Sbjct: 82 FVPSKQALGRACGVTRPVIACSVTSNEGSQLKTPIQNLKDAIEKLLI 128
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 153 bits (370), Expect = 4e-37
Identities = 70/107 (65%), Positives = 87/107 (81%)
Frame = +1
Query: 289 ILNLVQQAXNYKQLRKGAXXATKXLNRGLSELIIMAADAEPLEIVLHIPILCEXKNVPYV 468
I LV QA NYKQL+KGA ATK LNRG++E ++MAADAEPLEI+LH+P+L E KNVPYV
Sbjct: 20 IQELVSQAANYKQLKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYV 79
Query: 469 FVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIERLLV 609
FV SKQALGRACGV+RP+I+CS+T NE S L+ I ++ IE+LL+
Sbjct: 80 FVPSKQALGRACGVTRPVIACSVTSNEASNLRDPINNLKVAIEKLLI 126
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 70.5 bits (165), Expect = 3e-12
Identities = 35/105 (33%), Positives = 58/105 (55%)
Frame = +1
Query: 292 LNLVQQAXNYKQLRKGAXXATKXLNRGLSELIIMAADAEPLEIVLHIPILCEXKNVPYVF 471
L LV++A K L++G K + RG L ++A + P++++ H+PILCE N+PY++
Sbjct: 33 LKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIY 92
Query: 472 VRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIERLL 606
V SK+ L A RP +C + + KP I +E++ L
Sbjct: 93 VPSKEDLATAGTTKRP--TCCVLV----MTKPAKGEINEEVKEKL 131
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 70.1 bits (164), Expect = 3e-12
Identities = 32/84 (38%), Positives = 50/84 (59%)
Frame = +1
Query: 292 LNLVQQAXNYKQLRKGAXXATKXLNRGLSELIIMAADAEPLEIVLHIPILCEXKNVPYVF 471
L LV++A K L++G K + RG L I+A + P++++ H+PILCE N+PYV+
Sbjct: 33 LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVY 92
Query: 472 VRSKQALGRACGVSRPIISCSITI 543
V SK+ L A RP +C + +
Sbjct: 93 VPSKEDLATAGTTKRP--TCCVLV 114
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 49.6 bits (113), Expect = 5e-06
Identities = 21/79 (26%), Positives = 40/79 (50%)
Frame = +1
Query: 328 LRKGAXXATKXLNRGLSELIIMAADAEPLEIVLHIPILCEXKNVPYVFVRSKQALGRACG 507
++ G T + + ++L+++A D +P+E+V+ +P LC VPY V+ K LG
Sbjct: 128 VKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVH 187
Query: 508 VSRPIISCSITINEGSQLK 564
+ C T+ +L+
Sbjct: 188 KKTASVLCLTTVKNEDKLE 206
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 49.2 bits (112), Expect = 7e-06
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +1
Query: 328 LRKGAXXATKXLNRGLSELIIMAADAEPLEIVLHIPILCEXKNVPYVFVRSKQALGRACG 507
++ G T + + ++L+++A D +P+E+V+ +P LC +PY V+ K LG
Sbjct: 113 VKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVH 172
Query: 508 VSRPIISCSITINEGSQLK 564
+ C T+ +L+
Sbjct: 173 KKTASVLCLTTVKNEDKLE 191
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 33.1 bits (72), Expect = 0.48
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +1
Query: 328 LRKGAXXATKXLNRGLSELIIMAADAEPLEIVLHIPILCEXKNV 459
++ G T + + ++L+++A D +P+E+V+ +P LC +
Sbjct: 112 VKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEI 155
>04_04_0172 +
23290421-23290519,23291564-23291677,23291783-23291878,
23291955-23292039,23292262-23292317,23292432-23292510,
23292599-23292733,23292842-23293077,23293173-23293505
Length = 410
Score = 29.9 bits (64), Expect = 4.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 549 LIDGYRARYDGSGNTASTTECLLRPNKH 466
+++G DG G +T ECLL PN++
Sbjct: 165 VLEGGSIHVDGEGTCITTEECLLNPNRN 192
>07_03_1411 +
26379556-26379620,26379883-26379940,26380057-26380200,
26380367-26380426,26380789-26380956,26381043-26381117
Length = 189
Score = 29.5 bits (63), Expect = 5.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 325 QLRKGAXXATKXLNRGLSEL--IIMAADAEPLEIVLHIPILCEXKNVPYVFVRSKQ 486
Q RKG R L L +++AAD P + HIP L + VP + ++ +
Sbjct: 89 QSRKGHESIAPFKERVLYSLPVVLVAADCNPKWLTKHIPTLASTRQVPVLCLKDNK 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,980,385
Number of Sequences: 37544
Number of extensions: 310813
Number of successful extensions: 2733
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2670
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3969121332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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